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Mmessage mmachine sp6 ultra kit

Manufactured by Thermo Fisher Scientific
Sourced in United States

The MMESSAGE mMACHINE® SP6 ULTRA kit is a laboratory tool designed for in vitro transcription. The kit enables the synthesis of high-quality RNA transcripts from linearized DNA templates containing the SP6 RNA polymerase promoter.

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9 protocols using mmessage mmachine sp6 ultra kit

1

Morpholino-Mediated Knockdown of Gna12, Gna13a, and Gna13b in Zebrafish

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The morpholinos targeting gna12, gna13a, and gna13b are previously published38 (link) and were a kind gift from Fang Lin (University of Iowa). Morpholinos were combined and diluted in sterile water supplemented 1:10 with phenol-red dye, and then injected at a final concentration of 1 ng each in a total volume of 1 nl. To control for adverse side-effects from the injection process, we also injected control siblings with an equal volume of phenol-red diluted 1:10 in water. Contstitutively active Rho (rhov14) was kindly provided by Lila Solnica-Krezel and was transcribed and injected as described previously38 (link). The full-length mouse Gpr56 cDNA clone was obtained from Open Biosystems (Clone ID: 3709247), linearized with NotI, transcribed using the mMESSAGE mMACHINE® SP6 ULTRA kit (Ambion), and injected at a final concentration of 200 pg in 2 nl. For transcription of pCS2+_ zf_gpr56, the plasmid was linearized with NotI and also transcribed using the mMESSAGE mMACHINE® SP6 ULTRA kit (Ambion) before injection of a total concentration of 50 pg in 3 nl.
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2

Morpholino-Mediated Knockdown of Gna12, Gna13a, and Gna13b in Zebrafish

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The morpholinos targeting gna12, gna13a, and gna13b are previously published38 (link) and were a kind gift from Fang Lin (University of Iowa). Morpholinos were combined and diluted in sterile water supplemented 1:10 with phenol-red dye, and then injected at a final concentration of 1 ng each in a total volume of 1 nl. To control for adverse side-effects from the injection process, we also injected control siblings with an equal volume of phenol-red diluted 1:10 in water. Contstitutively active Rho (rhov14) was kindly provided by Lila Solnica-Krezel and was transcribed and injected as described previously38 (link). The full-length mouse Gpr56 cDNA clone was obtained from Open Biosystems (Clone ID: 3709247), linearized with NotI, transcribed using the mMESSAGE mMACHINE® SP6 ULTRA kit (Ambion), and injected at a final concentration of 200 pg in 2 nl. For transcription of pCS2+_ zf_gpr56, the plasmid was linearized with NotI and also transcribed using the mMESSAGE mMACHINE® SP6 ULTRA kit (Ambion) before injection of a total concentration of 50 pg in 3 nl.
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3

TALEN Construct Assembly and Embryo Injection

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TALEN constructs were assembled by the Hope Center for Neurological Disorders at Washington University using the Golden Gate TALEN assembly protocol 53 (link). The repeat variable diresidue sequences for the left and right TALENs were as follows: Left: NN NG NG NG HD NG HD HD HD NG NI NN NI HD NI NI NG and Right: NI NI HD NG NN NG NI NG HD NN HD NI NN HD HD NI NG HD NI NG. Synthetic TALEN mRNA was then transcribed using the mMESSAGE mMACHINE® SP6 ULTRA kit (Ambion), and RNA from each arm was combined and injected into 1-cell stage WT embryos (AB) at 100 pg quantities. To recover germ-line transmitted mutations, injected founders (F0s) were raised to adulthood, outcrossed to WT AB partners, and genomic DNA was extracted from individual F1 embryos for PCR amplification and restriction digest analysis of the targeted region. Genomic DNA from F1 embryos that showed disruption of the target site was then cloned using the TOPO® TA Cloning® kit (Invitrogen) and sequenced using Sanger sequencing.
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4

Synthesis of CBE4max and ancBE4max mRNAs

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pCS2+_CBE4max-SpG plasmid has been used to generate CBE4max-SpG mRNA in vitro. pCS2+_CBE4max-SpRY plasmid has been used to generate CBE4max-SpRY mRNA in vitro. Each plasmid was linearized with NotI restriction enzyme and mRNAs were synthesized by in vitro transcription with 1 µL of GTP from the kit added to the mix and lithium chloride precipitation (using the mMESSAGE mMACHINE sp6 Ultra kit #AM1340, Ambion).
pCMV_ancBE4max8 (link) (a gift from David Liu _ Addgene plasmid #112094) has been linearized using AvrII restriction enzyme; mRNAs were synthesized by in vitro transcription with 1 µL of GTP from the kit added to the mix and lithium chloride precipitation (using the mMESSAGE mMACHINE T7 Ultra kit #AM1345, Ambion).
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5

TALEN Construct Assembly and Embryo Injection

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TALEN constructs were assembled by the Hope Center for Neurological Disorders at Washington University using the Golden Gate TALEN assembly protocol 53 (link). The repeat variable diresidue sequences for the left and right TALENs were as follows: Left: NN NG NG NG HD NG HD HD HD NG NI NN NI HD NI NI NG and Right: NI NI HD NG NN NG NI NG HD NN HD NI NN HD HD NI NG HD NI NG. Synthetic TALEN mRNA was then transcribed using the mMESSAGE mMACHINE® SP6 ULTRA kit (Ambion), and RNA from each arm was combined and injected into 1-cell stage WT embryos (AB) at 100 pg quantities. To recover germ-line transmitted mutations, injected founders (F0s) were raised to adulthood, outcrossed to WT AB partners, and genomic DNA was extracted from individual F1 embryos for PCR amplification and restriction digest analysis of the targeted region. Genomic DNA from F1 embryos that showed disruption of the target site was then cloned using the TOPO® TA Cloning® kit (Invitrogen) and sequenced using Sanger sequencing.
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6

GPR56 mRNA Microinjection in Zebrafish

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The full-length WT mouse GPR56 cDNA clone (openbiosystems clone ID: 3709247) and all mutant derivatives of GPR56 (H89A, S150A, H381S, C121S+C177S) were linearized with NotI, transcribed using the mMESSAGE mMACHINE® SP6 ULTRA kit (Ambion), combined with phenol-red dye and injected at a final concentration of 50 pg in 2 nl. To control for adverse side-effects resulting from mechanical stress during injection, we also injected zebrafish embryos with an equal volume of phenol-red diluted 1:5 in water.
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7

Sema4C mRNA Overexpression in Zebrafish

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The full-length of sema4C (ENSDART00000113037.3) was cloned into PCS2+ vector and transcribed in vitro with the mMESSAGE mMACHINE Sp6 Ultra Kit (Ambion, Austin, TX, USA). The Approximately 2 nL of the mixture containing purified mRNA, and sema4C Mo was then injected into 1-cell embryos.
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8

Sema6D Rescue in Zebrafish Embryos

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Full-length and truncated coding sequences of sema6D were synthesized and inserted into PCS2+ vector as templates for in vitro transcription. The mRNA synthesis was carried out by using the mMESSAGEmMACHINESp6 Ultra Kit (Ambion) and purified with the MEGAclearTM Transcription Clean-Up Kit (Ambion) before the injection. Finally, 2 nl capped mRNA was co-injected with sema6D Mo into one-cell stage embryos. The fli1a:sema6D plasmid was constructed by LR recombination as described in the LifetechMultiste Gateway Manual (Life Technologies, Carls-bad, CA, USA). Then, the construct was injected into one cell stage embryos of Tg(mnx1:EGFP::kdrl:ras-mcherry) zebrafish for tissue specific rescue experiments (1 ng per embryo).
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9

Cloning and mRNA Synthesis for CBE4max-SpG and CBE4max-SpRY

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To generate the pCS2+_CBE4max-SpG and the pCS2+_CBE4max-SpRY plasmids, each CBE4max-SpG and CBE4max-SpRY sequence has been inserted into pCS2+ plasmid linearized with EcoRI using the Gibson Assembly Cloning Kit (New England Biolabs). The fragment has been amplified using the primers F-5'-TGCAGGATCCCATCGATTCGGCCACCATGAAACGGACAG -3' and R-5'-TAGAGGCTCGAGAGGCCTTGTCAGACTTTCCTCTTCTTCTTGG -3') from the pCAG-CBE4max-SpG-P2A-EGFP plasmid (Addgene plasmid #139998) 14 and from the pCAG-CBE4max-SpRY-P2A-EGFP plasmid (Addgene plasmid #139999) 14 .
mRNAs synthesis pCS2+_CBE4max-SpG plasmid has been used to generate CBE4max-SpG mRNA in vitro. pCS2+_CBE4max-SpRY plasmid has been used to generate CBE4max-SpRY mRNA in vitro. Each plasmid was linearized with NotI restriction enzyme and mRNAs were synthesized by in vitro transcription with 1 µL of GTP from the kit added to the mix and lithium chloride precipitation (using the mMESSAGE mMACHINE sp6 Ultra kit #AM1340, Ambion).
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