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Qpcr master mix

Manufactured by Carl Roth
Sourced in Germany

The QPCR Master-Mix is a ready-to-use solution for quantitative polymerase chain reaction (qPCR) experiments. It contains all the necessary components, including a DNA polymerase, buffer, and dNTPs, to perform qPCR reactions.

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2 protocols using qpcr master mix

1

Real-Time PCR Analysis of UGT1A Isoforms

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Total RNA from cells was isolated using Trizol reagent (Invitrogen) according to manufacturer's guidelines. Equal amounts of RNA were reverse-transcribed using M-MuLV Reverse Transcriptase (NEB) and real-time PCR analysis was performed using qPCR Master-Mix (75 mM Tris-HCl, pH 8.8, 20 mM (NH4)2SO4, 3 mM MgCl2, 0.3 M Trehalose (all from Roth, Karlsruhe, Germany), 0.01% Tween-20, 0.25% Triton X-100 (both from Applichem, Darmstadt, Germany), SYBR Green 1:80 000 (Fermentas, Schwerte, Germany), 0.2 mM dNTPs, 20 U/ml Taq-polymerase (both from Primetech, Minsk, Belarus) and 0.3 mM primers. Primers for total UGT1A: 5′-ATCTGCTTGGTCACCCGATG-3′ and 5′-TCCATGCGCTTTGCATTGTC-3′ for UGT1A1: 5′-GCCATTCCAAAGGGAGGATGTG-3′ and 5′-TGGGAACAGCCAGACAAAAGC-3′ for cluster UGT1A3-5: 5′-CATAATGAGGCCCTGATCAGGC-3′ and 5′-AATCGACAGGTACTTAGCCAG-3′ for UGT1A6: 3′-GCTGGTGGTCCCTCAGGAC-5′ and 5′-CAGCTCTTCTTGGTCATACGGC-3′ for cluster UGT1A7-10: 5′-CACAGTGCCCTGCTCCTC-3′ and 5′-GTTTGGAGAATTTCAGAGGCTATTTC-3′ for normalizer HPRT1: 5′-ATGCTGAGGATTTGGAAAGG-3′, and 5′-TCATCACATCTCGAGCAAGAC-3′. Primers (Metabion, Mansried, Germany) were used in a two-step protocol (2 min at 95 °C pre-heating; 40 cycles at 95 °C for 15 s followed by 58 °C for 1 min).
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2

Quantitative RT-PCR Analysis of Gene Expression

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RNA from human cell lines and colonic tissues and tumors was isolated using Trizol reagent (Invitrogen) according to manufacturer guidelines. Tissues and tumor pieces were shredded using a homogenizer (T10 basic ULTRA-TURRAX). After reverse transcription (M-MuLV Reverse Transcriptase from NEB) of equal amounts of mRNA, quantitative real-time PCR analysis was performed using a qPCR MasterMix (72 mM Tris-HCl pH 8.8 (Roth), 19 mM (NH4)2SO4 (Roth), 0.01% Tween-20 (AppliChem), 3 mM MgCl2, (Sigma-Aldrich), 1:80,000 SYBR Green (Invitrogen), 0.24 mM dNTPs, (dATP, dCTP, dGTP, dTTP, all dNTPs from Primetech), 19 U/ml Taq-polymerase (Primetech), 0.24% Triton X-100 (AppliChem), 300 mM Trehalose (Roth). Used primers are listed in Supplemental Table 1. For gene analysis, at least two different cDNAs (technical replicates) were used for qRT-PCR runs from one biological replicate. Biological replicates are independent experiments.
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