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6 protocols using ab134057

1

Immunostaining of Human iPSCs and EBs

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For immunostaining, human iPSCs and EBs were fixed in 4% paraformaldehyde (PFA) for 10 min at room temperature, washed with PBS, and permeabilized in 0.3% Triton X-100 in PBS for 10 min at room temperature. Primary antibodies used were anti-Oct4 (ab18976, Abcam, Cambridge, UK), anti-Nanog (ab62734, Abcam), anti-SOX2 (ab97959, Abcam), anti-TRA-1-60 (ab16288, Abcam), anti-Nestin (ab22035, Abcam), anti-α-SMA (ab5694, Abcam), anti-Brachyury (AF2085, R&D Systems, Minneapolis, MN, USA), and anti-GATA4 (ab134057, Abcam). After primary antibody incubation, samples were washed with PBS and incubated with secondary Alexa Fluor 488-conjugated antibodies (Life Technologies), diluted 1:2,000. Samples were also counterstained with DAPI (200 μg/mL). Slides were observed using an Olympus BX61 research microscope equipped with a cooled CCD camera. Images were captured and analyzed with Applied Imaging software CytoVision.
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2

Whole-Cell Protein Extraction and Western Blotting

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To extract whole‐cell proteins, cells were lysed in 1 × RIPA buffer (Solarbio, Beijing, China) containing a cocktail solution of protease inhibitors (Sangon Biotech) on ice for 30 minutes and then centrifuged (12 000 × g for 10 minutes at 4°C). Subsequently, the Bradford method was used to normalize protein concentrations, and a representative Western blotting protocol was adopted. In brief, 20 μg of protein per channel was separated through 10% SDS‐PAGE and then transferred to polyvinylidene difluoride (PVDF) membranes (Millipore, Billerica, MA, USA). After blocking with a blocking solution (5% skim milk in Tris‐buffered saline with 0.1% Tween‐20, TBS‐T) for 1 hour, the membranes were incubated with the primary antibodies (including rabbit anti‐human NR5A1: ab168380, GATA4: ab134057, DMRT1: ab126741, GAPDH: ab37168, Abcam, Cambridge, UK, at 1:2000; and rabbit anti‐human CYP17A1: orb213833, HSD3B1: orb5478, STAR:orb129747, CYP11A1: orb213832, Biorbyt, San Francisco, CA, USA, at 1:1000) overnight at 4°C. Next, the membranes were incubated with the goat anti‐rabbit secondary antibody (ab150079, Abcam, 1:10000) for 1 hour at RT in the dark, and specific bands were detected using a two‐colour Infrared Laser Imaging System (LI‐COR Odyssey, USA).
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3

Hypoxia-Induced CSC Apoptosis Analysis

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Anti-hypoxic activity and CSC markers were detected by FCM Analysis. CSCs were incubated with the supernatant fluids of MΦ, LPS + MΦ, pMΦ, and MSCs. Cells were then harvested after 0, 6, 12, and 24 h in hypoxia (0.5% O2), respectively. Apoptosis of CSCs was determined using the Annexin V-PE/7-ADD as previously described. Three steps were followed to determine CSC markers. In step one, the cells were fixed with 4% paraformaldehyde (Fushen, Shanghai, China, Cat#FS030101) for 10 min and then permeabilized with 0.1% PBS-Tween20 (Beyotime, Shanghai, China, Cat#ST825) for 20 min. In step two, the cells were washed thrice with PBS and resuspended with 100 µL PBS, and then primary antibody was added for 30 min at room temperature. The secondary antibody was added for 30 min at room temperature, and the cells were washed thrice and resuspended with 100 µL PBS. Then, the cells were washed and resuspended in PBS and identified by FCM; the results were analyzed using FlowJo software. The primary antibody against GATA-4 (Cat#ab134057) and TnI (Cat#ab47003) and the secondary antibodyAlexa Fluor® 488 goat anti-rabbit IgG (H + L) (Cat#ab150077) were purchased from Abcam (Cambridge, UK), and used at the recommended concentrations in experiments carried out in triplicate.
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4

Antibody Source and Characterization

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BCECF-AM was from Molecular Probes (Eugene, OR). BI-D1870 was purchased from the Division of Signal Transduction Therapy Unit, University of Dundee, Dundee, UK. EMD87580 (EMD) was a generous gift of Dr. N. Beier of Merck KGaA (Frankfurt, Germany). All other routine chemicals were of analytical grade and were purchased from BD Biosciences (San Jose, CA), Fisher Scientific (Ottawa, ON) or Sigma (St. Louis, MO). The primary antibodies used for western blotting were mouse monoclonal anti-HA-tag (6E2), rabbit polyclonal ERK1/2 (#9102), mouse monoclonal phospho-ERK1/2 (Thr202/Tyr204) (#9106), and rabbit polyclonal phospho-RSK (Ser380) (#9341), all from Cell Signaling Technology (Pickering, ON). The mouse monoclonal antibody against NHE1 was from BD Biosciences Pharmingen (San Diego, CA). Rabbit polyclonal RSK1 (C-21) (sc-231), goat polyclonal RSK2 (C-19) (sc-1430) and rabbit polyclonal p-GATA4 Ser262 (sc-32823) antibodies were from Santa Cruz Biotechnology (Santa Cruz, CA). Rabbit polyclonal antibodies for α-tubulin (ab4074) and GATA4 (ab-134057) were purchased from Abcam (Cambridge, MA). Secondary antibodies conjugated with peroxidase, goat-anti-mouse, goat-anti-rabbit and donkey-anti-goat were purchased from Jackson ImmunoResearch (West Grove, PA) or Abcam.
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5

Immunofluorescence Analysis of Stem Cell Markers

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Cells and/or EBs were fixed for 10 min in 4% paraformaldehyde in PBS and permeabilized with 0.1% Triton × 100 in PBS (Sigma). After blocking in blocking buffer (PBS containing 0.01% Triton × 100 and 1% BSA) they were incubated overnight at 4 °C with the following primary antibodies: chicken anti-GFP antibody (1:1000, Abcam #AB13970), rabbit anti-NANOG antibody (1:500, Abcam #AB80892), mouse anti-βIII-TUBULIN (1:500, R&D Systems), mouse anti-α-ACTININ (1:400, Sigma #7811), rabbit anti-GATA4 (1:200, Abcam #AB134057). The following conjugates antibodies specific to the appropriate species were used: goat anti-Chicken IgY Alexa Fluor® 488 and Alexa Fluor® 500 (1:500, Invitrogen A-11039 and A-21437) and donkey anti-mouse Alexa Fluor® 594 (1:200, Invitrogen A-21203). Nuclei were stained with DAPI (Invitrogen). An Axiovision fluorescence microscope (Carl Zeiss) and a Nikon Eclipse Ti microscope were used for these analyzes.
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6

Cardiac Protein Expression Analysis

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Protein was extracted from cardic tissues, cardiomyocytes. 10ug total protain was separated on 12% SDS-PAGE at 80 V for 1.5 hour, and then transferred to a PVDF membrane (IPVH00010,Millipore,USA) at 300 mA for 1 hour. After blocking. Membranes were incubated with primary antibodies at 4 °C overnight and secondary antibodies at room temperature for 1 hour. The primary antibodies used in the study included rabbit anti-TSG101 (1:2000, ab125011, Abcam,USA), rabbit anti-CD9 (1:2000, ab92726, Abcam,USA), rabbit anti-TXNIP (1:1000, ab188865, Abcam,USA), rabbit anti-ASC (1:1000, 67824, CST,USA), rabbit anti-caspase-1 (1:1000, ab179515, Abcam,USA), rabbit anti-GATA4 (1:1000,ab134057,Abcam,USA), rabbit anti-BCL-2 (1:1000, #3498, CST, USA), rabbit anti-BAX (1:1000, #2772, CST, USA), rabbit anti-caspase-3(1:1000, #14220, CST, USA), rabbit anti-α-actinin (1:1000, ab9465, Abcam, USA), and rabbit anti-α-tubulin (1:1000, #2125, CST, USA). Immunoreactive proteins were visualized using ECL substrate kit (ab65623, Abcam, USA) and two-color infrared fluorescence imaging system(Odyssey CLX, LICOR, USA). Tubulin-α was applied as internal control.
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