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14 protocols using ab65142

1

Immunohistochemical Analysis of ER Stress Markers

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The OSCC samples were analyzed immunohistochemically using antibodies against PERK (Abcam, Cat No: ab65142), ATF6 (Abcam, Cat No: ab203119), or GRP78 (Abcam, Cat No: ab21685). Next, the brief deparaffinization of 4-μm sections was made in xylene, followed by dehydration in an ethanol diluent serial, and 0.3% hydrogen peroxidase was used to inhibit the activity of endogenous peroxidase at room temperature for 30 min. Then, a microwave oven was adopted to perform antigen retrieval before the blocking of non-specific binding with 5% normal goat serum at 37 °C for 15 min. The overnight incubation of sections was performed with the primary antibody at 4 °C in a humidified box. After three washes with PBS, biotinylated anti-mouse immunoglobulin was adopted for the incubation of sections at 37 °C for 30 min. The visualization of samples was made using 3, 3-diaminobenzidine tetrahydrochloride, followed by counterstaining with hematoxylin. For the analysis, the positive percentages of ER stress-related proteins were explored in five random areas of every sample using Image J.
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2

Investigating Renal Endoplasmic Reticulum Stress

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Renal tissues were homogenized in RIPA buffer (P0013, Beyotime, Shanghai, China) supplemented with protease inhibitors (539134, EMD Biosciences Inc., San Diego, CA). After centrifugation (12,000 rpm/min) at 4 °C for 15 min, the supernatant was added to the loading buffer. Protein samples were processed for immunoblot analysis as previously reported (Dixon et al.). The following primary antibodies were used: β-actin (AP0060; Bioworld Technology), protein kinase -like endoplasmic reticulum kinase (PERK, ab65142; Abcam), activating transcription factor 6 (ATF6, ab203119; Abcam), IRE1α (CST3294), p-IRE1α (phosphorylation sites: S724; ab124945; Abcam), JNK (CST9252), p-JNK (phosphorylation sites: Thr183/Tyr185; CST4668), CCAAT-enhancer-binding protein-homologous protein (CHOP, ab179823; Abcam), 4-hydroxynonenal (4-HNE, ab46545; Abcam), glutathione peroxidase 4 (GPX4, ab125066; Abcam). The working concentration of β-actin used was 1:5000, and that of the other antibodies was 1:1000. Secondary antibodies were obtained from Dingguo Co. Ltd. (Beijing, China) and were used at the final dilution of 1:5000. The odesay software was used for analysis (Li Cor, Lincoln, NE).
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3

Western Blot Analysis of Apoptosis Markers

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After treatment, whole cells were lysed with radioimmunoprecipitation assay (RIPA) buffer (Solarbio, R0010) at 4°C for 10 min, and the total proteins were quantified using a bicinchoninic acid (BCA) protein assay kit (Beyotime, P0010S). The proteins were separated via SDS-PAGE and transferred to polyvinylidene fluoride (PVDF, Millipore) membranes. After blocking with 5% skimmed milk, the membranes were incubated with primary antibodies overnight at 4°C. The primary antibodies included monoclonal anti-FLAG M2 (Sigma–Aldrich, F1804, 1:5,000), monoclonal anti-HA tag (Abcam, ab13834, 1:5000), anti-BAX (Abcam, ab53154, 1:5,000), anti-BclXL (ProteinTech, 66020-1-Ig, 1:2,000), anti-Caspase 9 (ProteinTech, 10380-1-AP, 1:1,000), anti-PERK (Abcam, ab65142, 1:500), anti-phosphate eIF2α (Abcam, ab214434, 1:1,000), anti-CHOP (Abcam, ab11419, 1:2,000), anti-Caspase 3 (Abcam, ab208161, 1:1,000), anti-PARP1 (Invitrogen, 436400, 1:2,000) and rabbit polyclonal anti-GAPDH (ProteinTech, 60004-1-Ig, 1:2,000). Following three washes, the membranes were probed with horseradish peroxidase-coupled secondary antibodies. Finally, the membranes were exposed, and signals were recorded using Image Lab software (Bio-Rad) after incubation with enhanced chemiluminescence (ECL) reagents (Beyotime, P0018FM). The relative band intensities were quantified using ImageJ software (V 1.8).
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4

Hepatic Protein Expression Analysis

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Ischemic hepatic lobes were dissected and homogenized in a buffer [2% SDS, 50 mM DTT, 62.5 mM Tris (pH 6.8), 10% glycerol] containing 1 mM PMSF (Amresco, LLC). The samples were then boiled for 5 min and centrifuged at 7,500 x g for 10 min at 4˚C. Supernatants were collected and protein concentrations were determined using a Bradford Protein Assay kit (Beyotime Institute of Biotechnology). Protein samples (35 µg) were then loaded and separated on a 12% SDS-PAGE. Following transfer onto a nitrocellulose membrane, the membranes were incubated with 5% skimmed milk to block non-specific antigens at room temperature for 2 h and probed with rabbit polyclonal antibodies (all 1:1,000) against ATF6 (cat. no. ab203119, Abcam), PERK (cat. no. ab65142, Abcam), glucose-regulated protein (GRP)78 (ab21685, Abcam), TNF-receptor-associated factor (TRAF)-2 (cat. no. ab62488, Abcam), C/EBP homologous protein (CHOP; cat. no. ab11419, Abcam), caspase-12 (cat. no. ab62463, Abcam) and GAPDH (cat. no. ab9485, Abcam) overnight at 4˚C. Following incubation with 1:1,000 diluted goat anti-rabbit IgG (H&L) secondary antibody (cat. no. G-21234, Themo Fisher Scientific) for 2 h at room temperature, the protein bands were developed using an enhanced chemiluminescence kit (Amersham; Cytiva).
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5

Western blot analysis of SHOC2, ERK1/2 and pERK1/2

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Western blot was performed as per previous publications [17 (link)–19 (link)]. Cells were lysed by 200 μL RIPA lysis buffer (R0010, Solarbio) and then centrifuged with 12000 rpm for 4 minutes at 4° C. The supernatant was obtained to separate proteins. An BCA Protein Assay Kit (PC0020, Solarbio) was used to detect the concentration of total proteins.
Total proteins of the same concentration (30 μg) were loaded in 10% gel of SDS-PAGE. The separated proteins were transferred to nitrocellulose membranes (Millipore, MA, USA) and incubated overnight together with primary antibodies, including anti-SHOC2 (1:1000 dilution, ab229805, Abcam, MA, USA), anti-ERK1/2 (1:1000 dilution, ab184699, Abcam), anti-pERK1/2 (1:1000 dilution, ab65142, Abcam) and anti-β-actin (1:1000 dilution, ab8226, Abcam). Then, the membranes and goat antirabbit IgG H&L (HRP) secondary antibody (ab205718, Abcam) were incubated at room temperature for 1 hour. Then the membranes were immersed in 200 μL Immobilon Western Chemiluminescent HRP substrate (WBKLS0100, Millipore) and protein signals were recorded by the Bio-Rad ChemoDox XRS System (Bio-Rad Laboratories, CA, USA).
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6

Western Blot Analysis of Protein Expression

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Radio Immunoprecipitation Assay (RIPA) lysis buffer, provided by Sigma (St. Louis, MO, USA), was used to collect protein lysates. BCA method was applied to quantify the total protein concentration. Proteins were added to SDS polyacrylamide gel electroelectrometry (PAGE), and electrotransferred to polyvinylidene fluoride (PVDF) membrane after electrophoresis separation. Blocking buffer (5% bovine serum albumin, BSA) was used to block the membranes at room temperature. After blocking, primary antibodies were used to incubate the membranes overnight at 4°C. Primary antibodies (Abcam, Cambridge, MA, USA) were used at the following dilutions: anti-PCNA (1:1000, ab18197), anti-cleaved-caspase-3 (1:1000, ab2302), anti-caspase-3 (1:500, ab13847), anti-Twist (1:2000, ab175430), anti-MMP-2 (1:1000, ab37150), anti-MMP-9 (1:1000, ab73734), anti-phosphorylation-p38 (p-p38) (1:1000, ab4822), anti-p38 (1:1000, ab31828), anti-p-JNK (1:1000, ab124956), anti-JNK (1:1000, ab179461), anti-p-ERK (1:1000, ab65142), anti-ERK (1:10,000, ab32537), anti-GAPDH (1:500, ab8245). After washing the membranes Tris-buffered saline containing 0.1% Tween-20 (TBS-T) for 4 times, the secondary antibody was added and incubated at 37°C for 30 min. GAPDH served as the loading control. All experiments were repeated 3 times.
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7

Western Blot Analysis of Protein Expression

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All cells after treatment were gathered and lysates were treated in lysis buffer (P0013K, Beyotime Institute of Biotechnology, China) containing a cocktail of protease inhibitor (P1050, Beyotime Institute of Biotechnology). Each lysate of total cell (30 μg/lane) was divided on 12% SDS-PAGE gels and electronically transferred to membranes of PVDF (ISEQ00010, Millipore, USA). In the wake of antigen blockading with QuickBlock™ Blocking Buffer (P0252; Beyotime Institute of Biotechnology), the PVDF membranes were implemented with anti-FAM193B (1-2 μg/ml, ab139820, Abcam, USA), anti-p-ERK (1/500, ab65142, Abcam), anti-t-ERK (1/1000, ab17942, Abcam), anti-p-AKT: (1/500, ab8805, Abcam), anti-t-AKT (1/10000, ab179463, Abcam) overnight. Subsequently, the membranes washed with TBST, were implemented with the secondary antibody (1/2000, ab205718, Abcam) and visualized with SuperSignal West Femto maximum sensitivity substrate (34095, Thermo Fisher, USA) by Image Lab software. The experiments were implemented in triplicate.
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8

Western Blot Analysis of Hepatic Lipid Metabolism

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Mouse liver tissues were homogenized in RIPA buffer with protease and phosphatase inhibitors (Bimake, Houston, USA). The protein concentration was determined using a BCA Protein Quantitative Assay Kit (Shenergy Biocolor Bioscience & Technology Co., Shanghai, China). Total protein was mixed with SDS loading buffer and subjected to SDS-PAGE on a 10% gel. Proteins were electrotransferred onto PVDF membranes (Millipore) and the blots were probed with the following primary antibodies overnight at 4 °C: anti-FASN (cst3180, Cell Signaling Technology, USA), anti-SREBP1C (ab3259, Abcam, USA), anti-SCD1 (ab19862, Abcam), anti-CPT1α (ab176320, Abcam), anti-MTP (sc-135994, Santa Cruz Biotechnology, USA), anti-CD36 (18836-i-ap, Proteintech, China), anti-FGF21 (ab171941, Abcam), anti-BIP (11587-1-ap, Proteintech), anti-p-IRE (ab48187, Abcam), anti-IRE (ab37073, Abcam), anti-eIF2α (cst9722, Cell Signaling Technology), anti-p-eIF2α (cst3597, Cell Signaling Technology), anti-ATF4 (10835-1-ap, Proteintech), anti-ATF6 (ab122897, Abcam), anti-p-PERK (sc-32577, Santa Cruz Biotechnology), anti-PERK (ab65142, Abcam) and anti-GAPDH (60,004–1, Proteintech). Appropriate secondary antibodies conjugated to horseradish peroxidase (Amersham) were diluted 1:5000 used. The bound primary antibodies were visualized using the Alpha Q detection system.
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9

Immunofluorescence Staining of Renal Cortex

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Tissue slides of renal cortical sections from control and experimental
mice were immersed in 100% xylene for 5 minutes four times, then placed in 100%
ethanol for 5 minutes two times, and then into 70% ethanol 5 minutes two times,
followed by 50% ethanol for 5 minutes twice. Slides were washed with
double-distilled water for 1 minute. Then slides were subjected to
1×retrieve-All antigen unmasking system buffer (catalog no. SIG-31910-50;
Covance, Dedham, MA) at 100°C for 90 minutes. Slides were kept at room
temperature for 20 to 30 minutes for cooling and washed with 1×PBS.
Slides were immersed in 0.3% Triton X-100 for 20 minutes at room temperature.
Slides were blocked with 2% bovine serum albumin for 2 hours. After blocking,
primary antibody CD44 (mouse monoclonal, sc-7297; Santa Cruz Biotechnology) and
phos-ERK (rabbit polyclonal, ab-65142, Abcam) were added overnight at
4°C. Next day, slides were washed with 0.1% Triton X-100 for 5 minutes
three times on shaker at room temperature. Secondary antibody was added with
fluorescence conjugated at 1:500 dilution for 1 hour at room temperature. Slides
were washed with 0.1% Triton X-100 for 5 minutes three times on a shaker at room
temperature and mounted for fluorescence microscopy.
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10

Western Blot Analysis of Apoptosis Markers

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After treatment, whole cells were lysed with radioimmunoprecipitation assay (RIPA) buffer (Solarbio, R0010) at 4°C for 10 min, and the total proteins were quantified using a bicinchoninic acid (BCA) protein assay kit (Beyotime, P0010S). The proteins were separated via SDS-PAGE and transferred to polyvinylidene fluoride (PVDF, Millipore) membranes. After blocking with 5% skimmed milk, the membranes were incubated with primary antibodies overnight at 4°C. The primary antibodies included monoclonal anti-FLAG M2 (Sigma–Aldrich, F1804, 1:5,000), monoclonal anti-HA tag (Abcam, ab13834, 1:5000), anti-BAX (Abcam, ab53154, 1:5,000), anti-BclXL (ProteinTech, 66020-1-Ig, 1:2,000), anti-Caspase 9 (ProteinTech, 10380-1-AP, 1:1,000), anti-PERK (Abcam, ab65142, 1:500), anti-phosphate eIF2α (Abcam, ab214434, 1:1,000), anti-CHOP (Abcam, ab11419, 1:2,000), anti-Caspase 3 (Abcam, ab208161, 1:1,000), anti-PARP1 (Invitrogen, 436400, 1:2,000) and rabbit polyclonal anti-GAPDH (ProteinTech, 60004-1-Ig, 1:2,000). Following three washes, the membranes were probed with horseradish peroxidase-coupled secondary antibodies. Finally, the membranes were exposed, and signals were recorded using Image Lab software (Bio-Rad) after incubation with enhanced chemiluminescence (ECL) reagents (Beyotime, P0018FM). The relative band intensities were quantified using ImageJ software (V 1.8).
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