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12 protocols using dylight 549

1

Quantification of TrxR1, CD44, E-Cadherin, and N-Cadherin Levels in Cells

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Cells were seeded at a density of 2 × 104/well on 4-well Lab-Teck II chamber slides (Nunc, Naperville, IL, USA). After indicated treatment, cells were washed twice with ice-cold PBS and fixed immediately with 4% paraformaldehyde in PBS for 15 minutes at room temperature. After two washes with PBS, cells were permeabilized with 0.25% Triton X-100 for 10 minutes at room temperature. Then cells were blocked with 1% bovine serum albumin (BSA) in PBS/Tween 20 for 30 minutes at room temperature and further incubated overnight with the primary antibodies against TrxR1 (Abcam, 1:300), CD44-PE (eBioscience, 1:160), E-Cadherin (BioLegend, 1:300) or N-Cadherin (Biolegend, 1:300) diluted in 1% BSA in PBS/Tween 20 in a humidified chamber at 4 °C. After three rinses with PBS, secondary antibodies conjugated with Dylight 488, Dylight 649 or Dylight 549 (Abbkine, 1:300) diluted in 1% BSA in PBS/Tween 20 (1:200) was added and incubated for 1 hour at room temperature in dark followed by three washes with PBS. Subsequently, nucleus were counterstained with 4′,6′-diamino-2-phenylindole (DAPI) for 10 minutes. Images were taken with a laser scanning confocal microscope (Nikon A1, Japan) and analyzed by NIS-Elements Viewer 4.20 software.
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2

Hypoxia-Induced VEGF and HIF-1α Expression

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Forty percent confluent cultured HeLa cells grown on coverslips were serum-deprived for overnight and treated with CoCl2 for 12 h. Then coverslips were fixed using 4% paraformaldehyde, permeated with 0.1% Triton X-100, and incubated with blocking buffer (10% goat serum in PBS) at room temperature for 1 h. After PBS wash, coverslips were incubated with VEGF-A (Abcam) or HIF-1α (Novus) antibody overnight at 4 °C, and then incubated with Dylight 549 (Abbkine, USA) for 1 h at room temperature. 4′, 6-diamidino-2-phenylindole (DAPI, Beyotime, China) was used for nuclear staining. Nikon A1+ R Real-Time Full-Spectrum Double Sweep Laser Scanning Confocal Microscope supported by quantification and image processing software NIS-Elements 4.3 (Nikon, Japan) was used for experiment evaluation.
Fresh resected tumor tissues were embedded in O.C.T. compound (Sakura, USA) and sliced into consecutive sections with a thickness of 10 μm utilizing a vibrating microtome (Leica CM1950, Nussloch, Germany). The slices were incubated with VEGF-A (Abcam) or Ki-67 (Abcam) antibody overnight at 4 °C
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3

Immunofluorescence Analysis of DJ-1, Nrf2, and GFAP

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Cells grown on glass coverslips and frozen sections of brain tissue were lightly fixed in 4% paraformaldehyde, blocked with 3% FBS/0.01% Triton X-100 in PBS, and incubated at 4 °C overnight with the following primary antibodies: anti-DJ-1 (1:50, Abcam, ab76008), anti-Nrf2 (1:50, Abcam, ab31163), and anti-GFAP (1:200, ABclonal, A10871). The next day, cells or sections were incubated with secondary antibodies at room temperature. Secondary antibodies were tagged with either DyLight 488 (anti-mouse, Abbkine, green, A23210) at 1:200 or DyLight 549 (anti-rabbit, Abbkine, red, A23320) at 1:200. Coverslips and sections were mounted with Vectashield containing DAPI. Sections and cells were imaged with a fluorescence microscope or a laser scanning confocal microscope.
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4

Immunofluorescence of Acetylated Tubulin

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Cells for anti-acetylated tubulin staining were incubated on ice for 30 min before fixation to depolymerize cytoskeletal microtubules. Cells were fixed with 4% paraformaldehyde (PFA) for 15 min at room temperature. Cells were then washed 3 times with PBS and permeabilized in 0.5% Triton X-100 in PBS for 15 min. Cells were blocked in 4% bovine serum albumin (BSA) for 1 h at room temperature and incubated with primary antibodies at 4°C overnight. Primary antibodies used for immunofluorescence are mouse anti-acetylated-tubulin (1:1,000, Sigma-Aldrich, St. Louis, MO, USA, Cat. #T6793) and rabbit anti-SPTA1 (alpha spectrin, 1:100, ABclonal Technology, Boston, MA, USA, Cat. #A12355). Alexa 488- or Alexa 549-conjugated secondary antibodies (Abbkine, Woburn, MA, USA) were applied for 1 h at room temperature. DNA was stained with DAPI. Secondary antibodies used for immunofluorescence were Dylight 488, Goat Anti-Rabbit IgG (1:500, Abbkine, Woburn, MA, USA, Cat. #A23220-1); Dylight 549, Goat Anti-Rabbit IgG (1:500, Abbkine, Woburn, MA, USA, Cat. #A23320-1); Dylight 488, Goat Anti-Mouse IgG (1:500, Abbkine, Woburn, MA, USA, Cat. #A23210-1); and Dylight 549, Goat Anti-Mouse IgG (1:500, Abbkine, Woburn, MA, USA, Cat. #A23310-1).
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5

Immunofluorescence Staining of Tissue Sections

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After deparaffinization, rehydration, antigen retrieval and blocking, tissue sections were double‐labelled by anti‐CD63 (A5271; ABclonal)/anti‐Rab27A (ab55667; Abcam)/anti‐Rab27B (13412‐1‐AP; Proteintech) and anti‐CD3 primary antibodies (Proteintech, 60181‐1‐Ig, 17617‐1‐A). Then, the sections were incubated with DyLight 488 (A23210; Abbkine) or Dylight 549 (Abbkine, A23220) and counterstained by 4‐6‐diamidino‐2‐phenylindole (DAPI). The double‐immunofluorescence (IF) stainings were photographed by a fluorescence microscope (Leica).
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6

Double-IF Analysis of BBB Markers

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Double-IF was performed as previously described [29 (link)]. Briefly, 15-μm-thick, frozen brain slices were washed three times with phosphate-buffered saline (PBS) and then antigen retrieval was performed in a microwave oven for 10 min in 0.01 M citrate buffer (pH 6.0). After blocking for 60 min in goat serum, the slices were incubated with primary antibodies (CD31, BD Bioscience, #562939; ZO-1, Thermo Fisher #PA5-85256; occludin, Thermo Fisher #40-4700; claudin-5, Thermo Fisher #34-1600) overnight at 4 °C. The slices were washed three times within PBS and then the corresponding secondary antibodies (DyLight 488, Abbkine; DyLight 549, Abbkine) were provided at 37 °C for 60 min. Finally, the slices were stained with DAPI (Thermo Fisher #62248) for 4 min. After washing and mounting, the sections were analyzed with an Olympus FV3000 confocal laser scanning microscope.
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7

Immunofluorescence Labeling of NLRX1 and Hsp60

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Frozen sections and cells coverslips were fixed in 4% paraformaldehyde and then washed with PBS. After blocked with 5% FBS/0.01% Triton X-100 in PBS at 37 °C for 1 h, the cells were incubated with the following primary antibodies: NLRX1 (1:100, Abcam, ab105412), Hsp60 (1:100, Proteintech, 66041-1-1g) overnight at 4 °C. The next day, cells and sections were incubated in goat anti-mouse IgG antibody DyLight 488 (1:200, Abbkine, green, A23210) and goat anti-rabbit IgG antibody DyLight 549 (1:200, Abbkine, red, A23320) at 37 °C for 30 min. Vectashield containing DAPI was used to mount Coverslips and sections. A laser scanning confocal microscope (LSCM) was used to visualize sections and glass slides.
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8

Immunohistochemical Analysis of Microglia

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The mice were anesthetized by 1 mg/kg sodium pentobarbital (i.p.) and perfused rst with saline containing 20 units/mL heparin for 3 min and then with 4% paraformaldehyde in 0.1 mol/L PBS for 20 min, as previously described [17] . Then, the hypothalamus was separated, embedded in optimal cutting temperature compound, immediately frozen on dry ice, and stored at -80 °C. In vitro, BV-2 microglial cells were seeded onto glass coverslips. The samples were xed in 4% paraformaldehyde, permeabilized with 0.1% Triton X-100, and incubated with a 1:500 dilution of primary antibodies against Iba1 (Wako Pure Chemical Industries, Ltd, Japan), phospho-p65 (S536) (ab86299, Abcam, Cambridge, MA, USA), NPY (11976, Cell Signaling Technology, Beverly, MA, USA) or POMC (ab210605, Abcam, Cambridge, MA, USA). Then, the sections were incubated in uorescent-conjugated secondary Abs (DyLight 549, Abbkine, Wuhan, China). DNA was stained with 4',6-diamidino-2-phenylindole (DAPI).
Images were captured with a Nikon TE2000U microscope.
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9

Immunostaining Cellular Proteins SIRT1, PPARγ, and PGC-1α

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Cell slides and frozen sections were xed with 4% paraformaldehyde and then washed with PBS. Next, 3% FBS/0.01% Triton X-100 was used to seal in PBS at 37 °C for 1 h, and samples were then incubated overnight at 4 °C with the following primary antibodies: anti-SIRT1 (1:150; cat. no. 25122; SAB), anti-PPARγ (1:50; cat. no. sc-271392; Santa Cruz Biotechnology, Santa Cruz, CA, USA), and anti-PGC-1α (1:100; cat. no. NBP1-04676; Novus). Samples were then incubated for 30 min at 37 °C with secondary antibodies tagged with either DyLight 488 (anti-mouse; green; cat. no. A23210; Abbkine) or DyLight 549 (anti-rabbit; red; cat. no. A23320; Abbkine) at 1:200. A laser-scanning confocal microscope was used to observe the sections and glass slides.
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10

Immunostaining Cellular Proteins SIRT1, PPARγ, and PGC-1α

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Cell slides and frozen sections were xed with 4% paraformaldehyde and then washed with PBS. Next, 3% FBS/0.01% Triton X-100 was used to seal in PBS at 37 °C for 1 h, and samples were then incubated overnight at 4 °C with the following primary antibodies: anti-SIRT1 (1:150; cat. no. 25122; SAB), anti-PPARγ (1:50; cat. no. sc-271392; Santa Cruz Biotechnology, Santa Cruz, CA, USA), and anti-PGC-1α (1:100; cat. no. NBP1-04676; Novus). Samples were then incubated for 30 min at 37 °C with secondary antibodies tagged with either DyLight 488 (anti-mouse; green; cat. no. A23210; Abbkine) or DyLight 549 (anti-rabbit; red; cat. no. A23320; Abbkine) at 1:200. A laser-scanning confocal microscope was used to observe the sections and glass slides.
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