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6 protocols using dynabeads human t activator anti cd3 28

1

FOXP3 Expression Analysis in Edited CD4+ T Cells

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FOXP3 mRNA expression was detected by RT-PCR in FOXP3FL edited CD4+ T cells and controls after 3 days of reactivation with Human T-Activator anti-CD3/28 Dynabeads (Life Technologies, 1:25 bead:cell ratio). RNA was extracted with TRI Reagent (Sigma-Aldrich), and polyA+ mRNA was reverse transcribed into cDNA using SuperScript III First-Strand Synthesis System (Thermo Fisher Scientific). PCR amplification of FOXP3 cDNA was performed using Herculase II fusion polymerase (Agilent Technologies), and primers are listed in table S1. For assessing FOXP3 protein expression by flow cytometry, cells were fixed and permeabilized using FOXP3 staining solutions (eBioscience) and stained with anti-FOXP3 mAb (clone 259D/C7) conjugated to either AF647 (BD Biosciences) or AF488 (BioLegend) following the manufacturer’s instructions. Fluorescence was detected on a FACSAria II SORP (BD Biosciences), analyzed using FlowJo software v4 10.5.0, and median florescence intensity (MFI) was recorded.
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2

Quantifying T-cell Cytokine Production and Proliferation

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Teff cytokine production was quantified using enzyme-linked immunosorbent assay (ELISA) for IL-2 (BD Biosciences), IFN-γ (BD Biosciences), and IL-17 (R&D Systems). Teff cells were activated using Human T-Activator anti-CD3/28 Dynabeads (Life Technologies) at a 1:25 ratio of beads:cells in 96-well round well plates at 2 × 105 cells per 200 μl. Supernatants were collected at 24 hours (IL-2) and 48 hours (IFN-γ and IL-17) after activation. For the proliferation assay, Teff cells were stained using the CellTrace CFSE Cell Proliferation Kit (Life Technologies) and cultured at 5 × 104 cells per well in 96-well round well plates. The stained cells were activated with a 1:25 ratio of anti-CD3/28 Dynabeads and analyzed for CFSE staining on days 2 to 4 after activation on a FACSAria II SORP (BD Biosciences). The percentage of proliferated cells was determined using FlowJo software v4 10.5.0 and gated using nonactivated responders as a reference.
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3

Isolation and Stimulation of Human PBMCs

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Peripheral blood mononuclear cells (PBMC) were isolated from healthy donors (DeGowin Blood Center) using gradient centrifugation. Following informed consent, Holden Comprehensive Cancer Center patients receiving weekly single agent RTX treatment provided peripheral blood collected before the 1st, 2nd, and 4th RTX infusion for analysis. The use of human samples was approved by the Institutional Review Board. Raji B cell lymphoma cells were obtained from ATCC. SQ20B cells were provided by Andrean Simons-Burnett at the University of Iowa. RTX, obinutuzumab (OBZ), cetuximab (CTX) and trastuzumab (TRA) were from University of Iowa Hospitals & Clinics. 1DT3D was developed as previously reported[11 (link)]. CellTrace CFSE, CellTracker Red CMTPX dye, Dynabeads Human T-Activator anti-CD3/28 and CountBright Absolute counting beads were from Thermo Fisher.
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4

Generating mbIL15-T2A-NGFR Expressing CAR-T Cells

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RD18 cells that can produce a retroviral vector encoding mbIL15-T2A-NGFR were a kind gift from Dr Kazuhide Nakayama of Takeda Pharmaceuticals. CAR-T cells were stimulated with Dynabeads Human T Activator anti-CD3/28 (Thermo Scientific). Three days after the stimulation, the cells were transduced with a retroviral vector encoding mbIL15-T2A-NGFR. NFGR-positive cells were purified by FACS.
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5

CRISPR-Mediated Gene Editing in Primary T Cells

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Primary T cells were stimulated with Dynabeads Human T Activator anti-CD3/28 (Thermo Scientific). Four days after the stimulation, electroporation was performed using an Amaxa P3 Primary Cell Kit and 4D-Nucleofecter (Lonza). Ten micrograms of recombinant S. pyogenes Cas9 (Thermo Fisher Scientific) and 1.25 μg of chemically synthesized sgRNAs for DGKa and DGKz were incubated for 20 min before electroporation to generate Cas9-gRNA RNP complexes. A total of 5 × 105 cells were resuspended, and P3 buffer was added to the pre-incubated Cas9-gRNA RNP complexes. Cells were nucleofected using the program EO-115. One week after the electroporation, the cells were collected and the genomic DNA was isolated. The frequency of indels was calculated by Tracking of Indels by Decomposition (TIDE) analysis.
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6

CRISPR/Cas9 Genome Editing of T Cells

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CRISPR/Cas9-mediated genome editing of T cells was carried out as follows. Human peripheral blood pan-T cells were purchased from STEMCELL Technologies. Upon thawing, the T cells were allowed to rest overnight in RPMI supplemented with FBS, hrIL-2 (Peprotech, 50 U/mL), and hrIL-7 (Peprotech, 5 ng/mL) prior to activation. Activation was induced by the addition of Dynabeads Human T Activator anti-CD3/28 (ThermoFisher SCIENTIFIC) at a bead-to-cell ratio of 3:1 in RPMI supplemented with 10% FBS. 3 days later, the activating beads were removed and electroporation was carried out using an Amaxa P3 Primary Cell kit and 4D-Nucleofecter (Lonza). Eight micrograms of recombinant S. pyogenes Cas9 (Toolgen) and 2 μg of 5′-OH sgRNA were incubated for 20 min prior to electroporation to generate Cas9-gRNA RNP complexes. A total of 5 × 105 stimulated T cells re-suspended in P3 buffer were added to the pre-incubated Cas9-gRNA RNP complexes. Cells were nucleofected using program EO-115. Following electroporation, cells were seeded at 5 × 105 cells per mL in RPMI supplemented with 10% FBS, hIL-2 (Peprotech, 50 U/mL), and hIL-7 (Peprotech, 5 ng/mL). Electroporation-only controls were nucleofected without RNP complexes using the same conditions. Cells were counted using Countess II Fl (Life technologies). Images of the cells were taken using an EVOS Fl Cell Imaging System (Thermo Fisher Scientific).
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