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11 protocols using fibrinogen

1

hPSC-Derived Cardiac Patch Fabrication

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hPSC-derived cardiac cells (3TCC-hCMPs: 1.4 million hPSC-CMs, 0.2 million hPSC-AECs, and 0.2 million hPSC-SMCs; 4TCC-hCMPs: 1.4 million hPSC-CMs, 0.2 million hPSC-AECs, 0.2 million hPSC-SMCs, and 0.2 million hPSC-CFs) were suspended in 0.20 mL fibrinogen solution (0.12 mL fibrinogen, 25 mg/mL, Sigma-Aldrich; 0.02 mL growth factor reduced Matrigel, Corning; and 0.56 mL HEPES, 20 mM, pH 7.4, Corning); then, the cell-containing fibrinogen solution was mixed with thrombin solution (0.004 mL thrombin, 80 U/mL, MP Biomedicals; 0.001 mL CaCl2, 2 M, and 0.3 mL DMEM high glucose, Gibco) in a mould (internal dimensions: 1 cm × 1 cm; height: 2 mm) that had been precoated with 5% pluronic. The mixture solidified within a few minutes, and then culture medium (10% FCS, 2% B27 plus insulin, 2 mg/mL ε-aminocaproic acid, 10 µM ROCK inhibitor in DMEM medium) was added to the mould and the dish. Twenty-four hours later, the culture medium was replaced with DMEM containing 2% FCS, 2% B27 plus insulin, and 2 mg/mL ε-aminocaproic acid, and the patches were cultured at 37°C on a rocking (45 rpm) platform for 14 days.14 (link),24 (link) The culture medium was changed every 2 days, and synchronous beating of hPSC-CMs across the entire patch typically appeared on the second day after patch fabrication. hCMPs were trimmed to 0.5 cm × 0.6 cm × 2 mm before transplantation into mice.
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2

Immunofluorescence Analysis of Kidney Biopsy

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The kidney samples were obtained by renal biopsy from the patients administrated in Okayama University Hospital. We made frozen sections from renal biopsy samples, and cut at 4 um in a cryostat. We stained the frozen sections by fluorescein isothiocyanate (FITC)-conjugated antibodies in a moist chamber for 1 h. FITC-conjugated goat anti-human IgA, IgM, C3, C1q and fibrinogen were purchased from MP biomedicals, LLC, and FITC-conjugated goat anti-human IgG was purchased from Medical and Biological Laboratories Co., LTD. The images were obtained by fluorescence microscopes (Olympus, Japan). We collected only glomerular immunofluorescent images from each section. To analyze each glomerular image by deep learning, we aligned each size of glomerular images for comparison.
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3

In vitro Mycobacterium abscessus clot formation

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Sterile thrombin (GenTrac Inc, Middleton, WI) was diluted to 1000U/mL with sterile PBS and stored in 500 μL aliquots at-20C. Immediately prior to inoculation, aliquots were thawed in a water bath at 37C, then diluted 5:1 vol/vol with sterile PBS at 37C and desired quantity of M. abscessus was added. Thrombin solution was stored on ice until time of inoculation. A saturated fibrinogen (MP Biomedicals LLC, Solon, OH) solution was made in sterile PBS at 37C and then diluted 2:1 vol/vol with sterile PBS at 37C before desired quantity of M. abscessus was added. The fibrinogen solution was kept at room temperature and used within 60 minutes of preparation. Sterile thrombin and fibrinogen solutions were used for the control groups.
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4

Culturing Larval Brains for Live Imaging

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Third-instar larval brains were dissected in Schneider’s insect medium (Sigma-Aldrich) with 5% FBS (Gibco). Larval brains were then mounted in fibrinogen (MP Biomedicals; 5 µg diluted in 1 ml of Schneider’s insect medium solution), and clotting was induced using thrombin (MP Biomedicals) in 35-mm MatTek glass-bottom dishes. Brains were then cultured in 2 ml of Schneider’s insect medium containing 5% FBS, 0.5% penicillin (Gibco), Ecdysone (20 nM; Sigma-Aldrich), and insulin (200 µM; Sigma-Aldrich). Cultured brains were live imaged for 1–7 h.
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5

Sciatic Nerve Transection and Repair

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All nerve surgeries were performed under isofluorane anesthesia (4% induction, 2% maintenance) and the animals were given preoperative 0.05 mg/kg buprenorphine (intraperitoneal) to manage possible post-operative pain. The sciatic nerve, which includes the axons of the LG and other hindlimb muscles, was exposed by a mid-thigh skin incision and blunt dissection of the overlying biceps femoris. In animals in the cut/ligated condition, a silk suture was tied tightly around the sciatic nerve and then cut with sharp microscissors ∼2 mm below the ligation. In animals in which the sciatic nerve was cut and repaired, a small rectangle of SILASTIC film (Dow Corning No. 501-1) was placed beneath the nerve where it was secured with fibrin glue (∼5 μl, 2:1:1 thrombin, fibrinogen, fibronectin, MP BioChemicals, LLC catalog #154163, E.C. 3.4.21.5; fibrinogen, Sigma catalog #F3879, E.C. 2325986; fibronectin, Sigma catalog #F1141, E.C. 2891492) before transecting the nerve so that the proximal and distal segments aligned, as has been described elsewhere (English, 2005 (link); Sabatier et al., 2008 (link); Akhter et al., 2019 (link)). Sham animals had the sciatic nerve exposed but not transected.
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6

Fibrin Microthread Suture Fabrication

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Discrete fibrin microthreads were produced as described previously.14 (link) In brief, fibrinogen (70 mg/mL; MP Biomedical) and thrombin (8 U/mL; Sigma) were coextruded in a 10 mM HEPES (Calbiochem)-buffered bath (pH 7.4) using a custom-built system. After extrusion, the microthreads were allowed to polymerize before being removed and air dried.
To create biological sutures, 12 individual microthreads were hydrated with distilled water and twisted together. After drying, each bundle was cut to 4 cm lengths threaded through the eye of a surgical needle (size 26; Havel's, Inc.), hydrated, and twisted together to form a 2 cm long suture. Each suture was placed in a 4 cm long piece of silastic tubing (1.98 mm inner diameter, Dow Corning) with a 27-gauge 0.5 inch needle (Becton Dickinson and Co.) and secured with a slide clamp across the needles. Suture constructs were ethylene oxide sterilized and stored in a desiccator before cell seeding.
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7

Fibrin Gel Preparation Protocol

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Fibrin gels were prepared based on a protocol from Lim et al. [38 (link)] and Sharma et al. [39 (link)]. Briefly, a fibrinogen (MP Biomedicals, Auckland, New Zealand) solution at the desired concentration was prepared in MES/NaCl buffer (0.15 M NaCl, 2.5 Mm MES in water), PBS or serum-free media and stored at 37 °C for 30 min or until fully dissolved. pH was adjusted to 7.4 using NaOH drops. To prepare the gel, the fibrin solution was cross-linked with thrombin (Sigma-Aldrich, St. Louis, MO, USA) at a 20:1 volume ratio, and a 1 M CaCl 2 solution in water was added to the mixture at a volume ratio of 1:100 to thrombin. The solution was pipetted to ensure a homogeneous mixture and quickly poured into the wells as the gelation process begins when the three ingredients come together.
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8

Fibrinolytic Activity Assay of B. pumilus

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The fibrinolytic activities of the supernatants of B. pumilus 2.g cultures was determined using the fibrin plate method (20 (link)). Briefly, 7 mL of 0.3% (w/v) fibrinogen (MP Biomedicals, Santa Ana, CA, USA) solution in 1 M phosphate-buffered saline (PBS) was mixed with an equal volume of 2% (w/v) agarose solution and 0.1 mL of thrombin solution (100 NIH units/mL; MP Biomedicals) in a petri dish. The petri dish was left at room temperature for 1 h to allow a fibrin clot layer to form, a glass capillary tube was used to make a hole in the fibrin plate. Next, 20 μL of sample was dropped into the hole, and the plate was incubated at 37°C for 8 h. The size of the clear zone that formed was converted into plasmin units (U) by comparison to zones formed by known quantities of plasmin. Protein concentration was determined by the Bradford method (21 ) using bovine serum albumin (BSA) as the standard. All measurements were performed in triplicate and the average values are shown.
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9

Fibrinogen Cleavage Assay

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Fibrinogen (1 mg, bovine) (MP Biochemicals, IIIkirch-Graffenstaden, France) was mixed with AprEFSM4 (50 ng) and the mixture in 1 ml of 20 mM Tris-HCl (pH 8.0) was incubated at 37°C up to 12 h. Aliquots were taken at intervals and mixed with a 5 × SDS sample buffer. After boiling for 5 min, samples were analyzed by SDS-PAGE [18 (link)].
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10

Live Imaging of Cultured Larval Brains

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Third instar larval brains were dissected in Schneider's insect media (Sigma-Aldrich) with 5% Fetal Bovine Solution (FBS, Gibco). Larval brains were then mounted in Fibrinogen (MP Biomedicals; 5 µg diluted in 1mL of Schneider's insect media solution) and clotting was induced using thrombin (MP Biomedicals) in 35 mm MatTek glass bottom dishes. Brains were then cultured in 2 mL of Schneider's insect media containing 5% FBS, 0.5% penicillin (Gibco), Ecdysone (20 nM) (Sigma-Aldrich) and insulin (200 µM) (Sigma-Aldrich). Cultured brains were live imaged for a period between 1-7 hours on a confocal LSM780 (Zeiss).
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