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14 protocols using spectra por

1

Extraction and Purification of Bacterial LPS

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The LPS from each bacterial strain was extracted by a modified enzyme-phenol-water protocol [18 (link)]. Each LPS was obtained as a precipitate after an ultracentrifugation step (200,000× g, 4 °C, 16 h). Then, an enzymatic digestion was executed to remove possible cell contaminants by using DNase (DN25-Sigma Aldrich®, St. Louis, MO, USA), RNase (R5503-Sigma Aldrich®), and protease (P4630-Sigma Aldrich®). The digested materials were then again extensively dialyzed (Spectra/Por®, Fisher Sci. Leicestershire, UK, cut-off 12–14 kDa) against distilled water. In order to remove any phospholipids that were possibly present, all the LPS underwent several washes with a mixture of CHCl3/CH3OH (1:2, v/v) and CHCl3/CH3OH/H2O (3:2:0.25, v/v). After the removal of organic solvents and repeated cycles of lyophilization, an SDS-PAGE followed by gel staining with silver nitrate [19 (link)] was performed to establish the nature and the degree of purity of the extracted materials.
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2

Nanoparticle Synthesis and Purification

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Nanoparticles were prepared by solvent displacement in DMF/H2O with slow dropwise addition as previously described.[17 (link)] After stirring for 30 min, NPs were dialyzed (SpectraPor tubing, 12 – 14 kDa MWCO, Fisher Scientific) against deionized H2O. The clear yellowish suspensions were filtered (Whatman 13 mm syringe filter, 0.2 μm nylon membrane) before analysis and storage at 4 °C.
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3

In Vitro Cyclosporine A Release from Nanoformulations

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Two milliliters of CsA-nMIC, freshly prepared by co-SE method, and two milliliters of CsA-nFIB, freshly prepared either by co-SE or HWS method, were placed in a Spectra/Por dialysis membrane with MWCO of 12 kDa (Fisher Scientific, Pittsburgh, PA, USA) and incubated against 200 mL of distilled water while stirring. Samples of 50 μL were taken from the dialysis membrane for analysis every 24 hours. The water bath was also refreshed every 24 hours in order to create a continued exchange throughout the membrane and mimic sink conditions. Each sample was assessed using RP-HPLC as described above for the determination of CsA concentration, from which the percentage of released drug was calculated. CsA release rate constants from nMIC and nFIB were calculated by fitting the experimental CsA release data with a first-order exponential equation. Dialysis against 200 mL of PBS at 37°C was also performed for CsA-nMIC and CsA-nFIB, the latter prepared by HWS (Figure S3).
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4

Enzymatic Hydrolysis of Ultrasound-Treated Bran Proteins

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Proteins from the control (i.e., no sonication), ultrasonic cleaner bath, or probe-type ultrasound-treated brans were hydrolyzed with either Flavourzyme, Papain, or Alcalase. In each case, 1.5 g of proteins was dissolved in 20 mL of water. Appropriate amounts of protease were added to ensure a 2% enzyme to substrate ratio (w/w). The pH and temperature conditions were as follows: Flavourzyme: pH 7.0 and 50 °C; Papain: pH 7.0 and 60 °C; Alcalase: pH 8.0 and 60 °C. All the digestions were performed for 3 h and terminated by heating in a hot water bath at 85 °C for 5 min. Once cooled to room temperature, they were centrifuged at 8000× g (15 min, 4 °C) to collect the hydrolysates (i.e., supernatants).
The dialysis was performed using a cellulose ester Spectra/Por® (Fisher Scientific, Nepean, ON, Canada) membrane with a 100–500 Da molecular weight cut-off. The membranes were prepared by soaking in water to remove the storage buffer (0.05% sodium azide). The prepared membranes containing hydrolyzed protein solutions were immersed in water and gently stirred overnight (approximately 14 h). Solutions within the membranes were freeze dried, and their protein content was determined as previously reported [12 (link)].
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5

Silk Fibroin Extraction and Purification

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Silkworm (Bombyx mori) cocoons were purchased from Mulberry Farms as a source of silk fibroin protein (henceforth referred to as silk). Sodium carbonate (Na2CO3), and lithium bromide (LiBr) were purchased from Millipore Sigma for silk fibroin extraction from silkworm cocoons. Dialysis bags, 3.5 kDa molecular weight cut‐off (Spectra/Por), were purchased from Fisher Scientific to facilitate purification of silk fibroin. ICG dye was purchased from MP Biomedicals (#ICN15502050) and stored at 4°C. All solutions were freshly prepared in nanopure water (NPW; resistivity ~18.2 MΩ cm; Millipore Filtration System). BALB/c mice were purchased at ~10 weeks from Charles River Laboratories. Commercially available 4‐0 Monosof™ Monofilament Nylon Sutures (Medtronic) were purchased from esutures.com.
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6

HA-ALD Binding Kinetics Evaluation

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HA-ALD samples were dissolved in TRIS buffer (100 ​mM, pH ​= ​7) at 20 ​mg/mL at room temperature for 1 ​h. The mixture of HA and ALD was prepared with 500 ​kDa HA at 18.2 ​mg/mL and ALD at 1.8 ​mg/mL. Samples were placed in a dialysis membrane (MWCO 20 ​kDa, SpectraPor, Fisher Scientific Italia, Italy) in 10 ​mL of TRIS buffer (100 ​mM, pH ​= ​7) at 37 ​°C. Aliquots of 500 ​μL were taken at each time point for quantification of ALD in solution at each time point by analysing phosphorous content via ICP-OES analysis (PerkinElmer, Italy) at 213.5 ​nm (phosphorous specific wavelength), and the volume was replaced with fresh buffer. Samples were tested in triplicate.
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7

Preparation and Conjugation of dPSA

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dPSA was produced by heating a solution (10 mL) of 100 mg of colominic acid (MilliporeSigma) and 10 mg sodium cyanoborohydride (MilliporeSigma) in 2 M NaOH to 100 °C in a sealed hydrolysis tube (ThermoFisher Scientific) for 40 min. The solution was cooled, neutralized with 2 M HCl, dialyzed (Spectra/Por™, Fisher Scientific) two times with 4 L of water and lyophilized. dPSA containing 35% de-N-acetyl neuraminic acid residues, as determined by a modified resorcinol assay [30 (link)], was conjugated to biotin as described previously [28 (link)]. The ELISA was performed with serial dilutions of nucleolin or SEAM 3 as in the absence or presence of 50 μg/mL of colominic acid or unmodified dPSA as described previously [28 (link)].
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8

Extracting Water-Soluble Polysaccharides from C. azarolus

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The powdered pulps and seeds (60 g, each) were defatted with 95% ethanol and petroleum ether with continuous stirring for 24 h. The residues were dried and then extracted with hot water at 90°C for 5 h (three-time, 3 × 5 h). Following centrifugation at 4500 rpm for 10 min, the supernatants were mixed with 95% cold ethanol (3: 1, v/v) at 4°C overnight. Precipitates were dissolved in distilled water and deproteinized using Sevag reagent (chloroform/butanol 4: 1, v/v). The deproteinized mixture was dialyzed for 3 days (with 3500 Da cut-off, Spectra/Por™, Fisher Scientific, Illkirch, France) and lyophilized to obtain the water-soluble polysaccharides from C. azarolus seeds and pulps named, respectively, CAS and CAP.
Finally, the CAP and CAS extraction yields were calculated.
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9

Vinegar-based Tuna Collagen Extraction

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The acid-solubilized collagen using vinegar extraction was done according to the modification method of Tamilmozhi et al. [21 (link)]. The pretreated tuna-tail tendons (from 2.1) were soaked in 5% vinegar (Kewpie (Thailand) Co., Ltd., Bangkok, Thailand) with the ratio of tendon: 5% vinegar 1:20 (w/v) at 10 ± 1 °C using shaking incubator (LSI-3016R, Daihan Labtech Co., Ltd., Gyeonggi-do, Republic of Korea) with 200 rpm for 72 h. The extracted solution was filtrated using a double layer of cheesecloth and kept at 4 °C. The pellet was re-extracted with the same manner. The extracted solutions were mixed and precipitated using NaCl adding with a final concentration of 2.6 M for collagen obtaining. The resulting precipitate was obtained by centrifugation at 10,000× g for 30 min at 4 °C. Thereafter, the pellet was resuspended in a minimum volume of 5% vinegar (1:10, w/v), followed by dialysis in 50 volumes of distilled water for 24 h using the 100 kDa dialysis membrane (Spectra/Por, Thermo Fisher Scientific Inc., Gothenburg, Sweden). The resulting dialysate was lyophilized using a freeze-dryer (GFD-3H, Grisrianthong, Samut Sakhon, Thailand) to obtain acid-solubilized collagen using vinegar extraction (VTC) and kept at −18 to −20 °C until further use.
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10

Synthesis and Characterization of Polymer-based Drug Delivery System

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Iron (III) chloride hexahydrate (≥99%), iron (II) chloride tetrahydrate (98%), oleic acid (≥90%) (OA), potassium dihydrogen phosphate (≥98%), N-hydroxysuccinimide (NHS) (98%), N-(3-dimethyl aminoproyl)-N’-ethylcarbodiimide hydrochloride (EDC), N,N′-dicyclohexylcarbodiimide (DCC) (≥99.0%), poly(ethylene glycol diamine) (NH2-PEG-NH2, Mn = 3000), (≥98.0%), polyvinyl alcohol (PVA, Mowiol 4–88), deuterated chloroform (≥99%) and oxaliplatin (OXA) (≥99%) were purchased from Sigma-Aldrich (St. Louis, MO, USA). Dialysis bags (Spectra/Por, MWCO: 3.5 and 12–14 kDa) and a monoclonal anti-CD133-TMP4 Ab conjugated to Alexa Fluor 488 were purchased from Thermo Fisher Scientific (Waltham, MA, USA). Commercial PLGA Mn of 10 kDa (Purasorb PDLG 7502A, 70/30 LA/GA) was kindly donated by Corbion (The Netherlands). Sodium hydroxide, chloroform, ethyl ether, tetrahydrofuran (THF), dichloromethane (DCM), ethanol, and ammonia p.a. were purchased from Penta (The Czech Republic). Media used for cell culture Eagle’s Minimum Essential Medium (EMEM) and Dulbecco’s Modified Eagles’ medium (DMEM) were bought from Thermo Fisher Scientific (Waltham, MA, USA). Microscopy dishes with glass bottom (ø35 mm, 1.5#) were supplied by MatTek Life Sciences (Boston, MA, USA). Filters with a 0.45-µm pore size were purchased from JetBiofil (China). For all experiments, Millipore water was used.
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