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Anti hnf4α antibody

Manufactured by Santa Cruz Biotechnology
Sourced in United States

The Anti-HNF4α antibody is a reagent used in laboratory research. It is designed to detect the presence of the HNF4α protein, which is a transcription factor involved in the regulation of gene expression. The antibody can be used in various experimental techniques, such as Western blotting, immunohistochemistry, and immunoprecipitation, to study the expression and localization of HNF4α in biological samples.

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6 protocols using anti hnf4α antibody

1

Identifying HNF4α Binding Sites

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Nuclear extract were prepared as described previously [34 (link)]. Double-stranded biotin-labeled oligonucleotides (Invitrogen, Guangzhou, China) harboring the predicted HNF4α binding site on the Exo70 promoter (5′-CCTACTTAGCCCTTTGGACTACACAAGG-3′) were used as probes. Competitors were non-biotin-labeled oligonucleotides. The EMSA experiment was carried out using LightShift Chemiluminescent EMSA Kit (Thermo Scientific, cat. #20148) in accordance with the manufacturer's guidelines. For supershift, anti-HNF4α antibody (Santa Cruz Biotechnology, Santa Cruz, CA, USA) was added to the nuclear extract after incubation with biotin-labeled probes. When the binding reaction finished, the mixtures were loaded onto a 6% polyacrylamide gel and subjected to electrophoresis, then transferred to a nylon membrane (Hybond-N, Amersham Pharmacia Biotech, Little Chalfont, UK). The biotin-labeled doublestranded DNA was then visualized using the Chemiluminescent Nucleic Acid Detection Module in this Kit.
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2

Immunofluorescence Analysis of PKM1 and HNF-4α in Liver Cancer Cells

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Treated HepG2 and SMMC-7721 cells were collected and seeded onto glass coverslips processed for immunofluorescence. The glass coverslips were washed twice with cold PBS for 5 min, fixed with 4% paraformaldehyde for 20 min and incubated with 0.2%Triton X-100 for 5 min at 4 °C. After incubation, the cells were blocked with PBS containing 3% BSA for 1 h and incubated with anti-PKM1 antibody (1:200, Cell Signaling Technology) and anti-HNF-4α antibody (1:50, Santa Cruz Biotechnology) overnight. After being washed twice with cold PBS for 10 min, the cells were stained with FITC-conjugated anti-rabbit and anti-mouse IgG antibody (1:200, Jackson ImmunoResearch, Suffolk, UK) for 1 h. In addition, then the coverslips were stained with diamidinophenylindole (DAPI) for 30 min. The images were captured with a confocal microscope (Olympus FV1000, Tokyo, Japan).
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3

Immunofluorescence Staining of Liver Markers

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The cells were fixed in PBS containing 4% paraformaldehyde (NJ-reagent, NanJing, CHINA) for 30 min and permeabilized with phosphate-buffered saline containing 0.1% Triton X-100 (NJ-reagent) for 20 min. The samples were incubated with anti-HNF4α antibody (1∶200; Santa Cruz Biotechnology, Santa Cruz, CA, USA), anti-human serum AFP antibody (1∶200; Santa Cruz Biotechnology), and anti-human serum ALB antibody (1∶200;Santa Cruz Biotechnology), and then with the secondary antibody conjugated to fluorescent phycobiliproteins, namely DyLight 594- and Alexa 488-conjugated goat anti-mouse immunoglobulin G (1∶1000; Beyotime, Shanghai, China). DAPI (Beyotime) was used for nuclear counterstaining.
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4

ChIP-PCR for TGF-β1 Promoter

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ChIP assays were carried out using an anti-HNF-4α antibody (Santa Cruz Biotechnology). Ten percent of chromatin prior to immunoprecipitation was used as input controls and non-specific antibody (rabbit anti-immunoglobulin G [IgG]; BD Biosciences) served as negative controls. The precipitated DNAs were subjected to PCR in attempt to amplify the HNF-4α-binding sites using primers specific for TGF-β1 promoter (forward: 5′CAACGTAAAAGGGCTGTACCT3′ and reverse: 5′AGCCATAGCCAGCAAGCTGG 3′). The amplified fragments were then resolved electrophoretically on a 2% (w/v) agarose gel and verified by DNA sequencing.
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5

HNF4α Chromatin Immunoprecipitation in HepG2 Cells

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ChIP using HepG2 cells and liver samples was performed according to a protocol using anti-HNF4α antibody and normal mouse IgG (Santa Cruz Biotechnology) [3 (link)]. Purified DNA was amplified by quantitative PCR using ΔΔCt method. Enrichment of the HNF4α binding site was normalized to the input samples compared with normal IgG antibody. The following primers were used for realtime PCR; Fsp27b and CIDEC2 promoters containing HNF4α binding site, and mouse Hmgcs2 and human MIR-194 genes without the HNF4α binding site as negative controls. Nucleotide sequences of the primers are shown in Supplemental Table 3.
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6

ChIP-qPCR Analysis of HNF4α Binding

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HNF4α-transfected HEK293T cells were fixed in 1% formaldehyde for 10 min at room temperature and chromatin immunoprecipitation was carried out using SimpleChIP Plus Enzymatic IP kit (Cell Signaling Technology) and anti-HNF4α antibody (Santa Cruz Biotechnology). Purified DNA was amplified by real-time PCR using ΔΔCt method. Enrichment of the HNF4α binding site was normalized to the input samples and expressed as fold-enrichment as compared to the control normal IgG antibody. Nucleotide sequences of the primers are as follows: megalin gene with HNF4α binding site (5′-ggggttcagtaatcggaaga-3′ and 5′-gtgacaggacagcgaggtg-3′), megalin gene without HNF4α binding site (5′-ggggttcagtaatcggaaga-3′ and 5′-gtgacaggacagcgaggtg-3′), OTC gene with HNF4α binding site (5′-aaatgaggaggccaggcaa-3′ and 5′-ggttagagatactgcagggca-3′), and OTC gene without HNF4α binding site (5′-tggcaataccacactgtttagt-3′ and 5′-ctgaaccacaaggaccccaa-3′).
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