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6 protocols using sc 166545

1

Western Blot Analysis of Mincle Protein

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Protein levels were analyzed by Western blot as described previously (24 (link), 26 (link)). Briefly, snap-frozen livers were homogenized and diluted. The protein content of homogenates was determined with the DC assay kit (Bio-Rad, Munich, Germany). Forty micrograms of protein samples was subjected to SDS-PAGE under reducing conditions (10% gels), and proteins were blotted on nitrocellulose membranes. The membranes were blocked and incubated with primary antibody against mincle (NBP1-49311, Novus Biologicals, Littleton, USA). Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) served as an endogenous control (sc-166545 for human samples and sc-47724 for rodent samples; both Santa Cruz Biotechnology, Santa Cruz, CA). Membranes were incubated with the corresponding secondary antibody, and blots were developed using enhanced chemiluminescence. Protein quantification was performed by ImageJ (version 1.51q, NIH, USA) and results were corrected for GAPDH levels.
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2

Protein Expression Profiling Optimization

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Cells were lysed completely in lysis buffer (50mM Hepes pH7.5, 150mM NaCl, 2mM EDTA, 2mM EGTA, 1% TritonX-100, 50mM NaF, 5mM Sodiun Pyrophosphate, 50mM Sodium β-glycerophosphate, 1mM DTT, 1mM PMSF, 10μg/ml Leupeptin, 10μg/ml Aprotinin) at 4°C. The protein content was determined using a BCA Protein Assay Kit (Thermo, USA). Total proteins were separated by SDS-PAGE and then transferred onto PVDF membranes (Millipore, USA). The blotted membranes were incubated with primary antibodies and then with corresponding secondary antibody of the primary antibody. Antibody against GAPDH (Santa Cruz, sc-166545) was purchased from Santa Cruz. The KIAA1199 (Proteintech, 21129-1-AP) antibody and Lamin B1 (Proteintech, 66095-1-Ig) antibody were purchased from Proteintech. The β-cateninantibody was provided by Division of Gastrointestinal Cancer Translational Research Laboratory (Peking University Cancer Hospital & Institute).
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3

Antibodies for TRIM67 and TRIM9 Characterization

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Antibodies: TRIM67 rabbit polyclonal generated using murine TRIM67 recombinant protein aa45-73 [used at 1:1000 for immunoblot, 1:500 for immunohistochemistry (IHC)]; TRIM9 rabbit polyclonal antibody (used at 1:1000 for immunoblot; Winkle et al., 2014 (link)); mouse monoclonal against GAPDH [sc-166545, Santa Cruz Biotechnology (SCBT), used at 1:2500]; mouse monoclonal against myc tag (sc-40, SCBT, used at 1:1000); mouse monoclonal against HA tag (05-904, Millipore, used at 1:1000); and mouse monoclonal against β-III-tubulin (801202, BioLegend, used at 1:2000 for immunoblot, 1:1000 for IHC). Fluorescent secondary antibodies labeled with Alexa Fluor 568 or Alexa Fluor 647 were obtained from Invitrogen.
The plasmid encoding myc-tagged human TRIM9 aa139-781 (myc-TRIM9ΔRING) was described previously (Winkle et al., 2014 (link)). The plasmid encoding myc-tagged mouse TRIM67 aa158-783 (myc-TRIM67ΔRING) was generated by cloning the partial mouse TRIM67 sequence into the pcs2 vector. pcDNA3-DCC-HA (HA-DCC) was a generous gift from Dr. Marc Tessier Lavigne (Rockefeller).
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4

SDS-PAGE and Immunoblotting of Retinal Proteins

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SDS-PAGE and immunoblotting were performed as previously described [23 (link)]. Briefly 15 mg of retina were separated by SDS-PAGE and transferred to nitrocellulose membranes. After blocking the membranes were incubated with the following primary antibodies: mouse anti-HSP25/27 (1/5000; SMC-163C/D, StressMarq), and anti-HSP70 (1/5000; SMC-114C/D, StressMarq), rabbit anti-LC3B (1/1000; #2775, Cell Signaling, MA 01915) and anti-Atg12 (1/1000; #2011, Cell Signaling). Mouse anti-GAPDH (1/500; SC-166545, Santa Cruz) was used as an internal control. Immunoblots were washed in TBS–0.02% Tween 20 (TBST), incubated for 1 h with the appropriate horseradish peroxidase-coupled IgG (diluted 1:5000), washed in TBS–0.02% Tween 20, revealed using Super Signal (Pierce, Rockford, IL), and exposed to Hyperfilm ECL (Amersham Biosciences). Silver staining using the Biorad Silver Stain Plus kit was performed according to the manufacturer’s instructions.
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5

Characterizing Cell Signaling Pathways

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The following reagents used in this study were purchased from the indicated sources: cycloheximide (Sigma, 20 μg/ml), doxorubicin (Sigma, 0.5 μg/ml), doxycycline (Sigma, 1 μg/ml), Hoechst 33342 (Sigma, 1 μg/ml), lipofectamine 2000 (Invitrogen), streptavidin-coated agarose beads (Thermo Fisher Scientific), complete EDTA-free protease inhibitor cocktail (Roche Applied Science), antibodies against GAPDH (Santa Cruz, sc-166545, 1:5000), p53 (Santa Cruz, sc-126, 1:1000), p21 (Sigma, #P1484, 1:2000), Flag (Sigma, #F3165, 1:4000), p27 (Abcam, Y236, 1:1000), cyclin D1 (Santa Cruz, sc-753, 1:1000), cyclin E1 (Santa Cruz, sc-481, 1:1000), PTBP1 (Proteintech, 12582-1-AP, 1:1000), HRP-conjugated secondary antibodies against mouse (115-035-062), and rabbit (111-035-144) (Jackson ImmunoResearch, 1:10000).
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6

Molecular Insights into Cancer Cell Signaling

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The cell lines (MDA-MB-231, MDA-MB-468, SKBR3, BT-474) were obtained from the American Type Culture Collection (ATCC, Manassas, VA, USA). Human β-arrestin-1 siRNA (sc-29741), β-arrestin-2 siRNA (sc-29208), and scrambled oligo-ribonucleotide complex utilized as control (sc-37007), siRNA transfection reagent (sc-29528), and transfection medium (sc-36868) were all obtained from Santa Cruz Biotechnology. Human β-arrestin-1 (ARRB1) cDNA (SC303424), human β-arrestin-2 (ARRB2) cDNA (SC108950), TurboFectin 8.0 transfection reagent (TF81001), cloning vector PCMV6-XL6 (PCMV6XL6), and cloning vector PCMV6-XL5 (PCMV6XL5) were all purchased from OriGene Technologies, MD, USA. The antibodies, β-Arrestin-1 (sc-9182), β-Arrestin-2 (sc-13140), CDC45 (sc-55569, CCNB1 (sc-245), CCNB2 (sc-28303), BUB1 (sc-365685), GAPDH (1:5,000; Sc-166545), goat anti-rabbit (1:10,000; Sc-31460), rabbit anti-goat (1:10,000; Sc-2768), and donkey anti-mouse (1:10,000; Sc-2314) were obtained from Santa Cruz Biotechnology, CA, USA. β-Arrestin-1 (D803J), β-Arrestin-2 (C16D9), IGF-1R (1:1000; D23H3), E-Cadherin (1:1000; 24E10), Snail (1:1000; C15D3), and Vimentin (1:1000; D21H3) were obtained from Cell Signaling Technology, the Netherlands.
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