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4 protocols using μ dish35 mm quad

1

Monitoring SARS-CoV-2 Infection and NK Cell Cytotoxicity

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1x104 U2OS-ACE2-GFP-1-10 and 1x104 U2OS-ACE2-GFP-11 cells were plated overnight in each compartment of a μ-Dish35 mm Quad (Ibidi). The next day, cells were infected at a MOI of 0.1. 18 hours later, NK cells were added at 1:1 ratio as well as serum from a pre-pandemic or a COVID-19 individual (dilution 1:100). Conditions without NK and Serum (“No serum No NK”) and with NK cells but without serum (“no serum”) were included as controls. Propidium iodide (PI) (10 μg/ml, Invitrogen) was added to monitor cell death. Transmission and fluorescence images were acquired at a 20X magnification every 4 minutes for 4 hours on a BioStation IM-Q (Nikon). At least 5 fields were recorded in each condition. Images were analyzed using the FIJI software.
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2

Imaging Bacterial Cell Filament Aggregation

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To image aggregated cell filaments, we pipetted 600 μL of SP-6 culture into a polymer coverslip bottom dish (μ-Dish 35 mm Quad, Ibidi GmbH, Gräfelfing, Germany) and imaged with an LSM780 confocal microscope (Carl Zeiss) at 15 min intervals. We imaged thin film-like aggregates at the air-liquid interface by incubating 2 mL of culture in a 24-well dish (Iwaki, Tokyo, Japan) using an Axio Zoom.V16 microscope (Carl Zeiss) equipped with a heater unit (Tokai Hit, Fujinomiya, Japan) at 15 min intervals. To image the aggregates at higher magnifications, we scooped the bacterial film and placed it on coverslips.
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3

Visualizing Myosin IIA and Actin Dynamics

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Cells expressing fluorescently tagged proteins were seeded in DMEM onto 35-mm glass bottom dish (Iwaki) or μ-dish 35 mm Quad (Ibidi) that was pre-coated with 50 μg/mL fibronectin. Cells were observed 3-8 hours after seeding. In the experiments of pharmacological treatments, observation was carried out 5 min after the drug application. The cells were observed using the inverted confocal microscope (A1Rsi, Nikon) equipped with an oil-immersion objective lens (NA 1.49, 60x, Apo-TIRF, Nikon or NA 1.45, 100x, Plan Apo, Nikon) and a heat chamber (TOKAI-HIT) under the 37°C and 5% CO2 humidified atmosphere.
Acquired images were analyzed using Fiji or NIS-Elements AR (Nikon) software. The average flow speed of myosin IIA-GFP or LifeAct-mCherry in each SF was calculated based on the slope in the kymograph depicted using Multi Kymograph tool in Fiji. This measurement was carried out for three SFs in each cell.
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4

Imaging of MIB2 and cFLIP interactions in HEK 293 cells

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HEK 293 cells were plated on an μ-Dish 35 mm Quad (80416, ibidi) and transiently transfected with expression vectors for MIB2-EGFP, along with DsRed-cFLIPL, DsRed-cFLIPs, or DsRed-caspase8C/S using PEI MAX 40000. The culture media was removed and changed to FluoroBrite™ DMEM (Thermo Fisher Scientific) containing 10% FBS supplemented with antibiotics. Fluorescent images of the cells were collected using a DeltaVision microscope system (GE Healthcare Life Sciences) built on an Olympus IX-71 inverted microscope base equipped with Photometric Coolsnap HQ2 CCD camera. A 100×/NA1.40 UPLS Apo oil immersion lens (Olympus) was used in a 37 °C heat chamber with 5% CO2 gas. FITC and TRITC filter sets were used for collecting data on EGFP and DsRed, respectively. The images were acquired and deconvoluted in SoftWoRx (Applied Precision) and analysed by ImageJ.
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