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Quickextract dna solution

Manufactured by Illumina

QuickExtract DNA solution is a rapid DNA extraction method designed to quickly and efficiently extract DNA from a variety of sample types, including bacterial cultures, plant tissues, and animal tissues. The solution provides a simple, scalable, and cost-effective way to obtain high-quality DNA for downstream applications such as PCR, sequencing, and other molecular biology techniques.

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2 protocols using quickextract dna solution

1

CRISPR/Cas9-mediated Gene Editing in Murine Myoblasts

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pSpCas9(BB)-2A-Puro-Gaac.1826 gRNA expression vectors and donor ssODNs were transfected into C2C12 murine myoblast cells (ATCC CRL-1772) using nucleofection-based transfection (Neon transfection system, Invitrogen). For nucleofection-based transfection, 3×105 cells were resuspended in a reaction mixture containing 4.5 μg pSpCas9(BB)-2A-Puro-Gaac.1826 gRNA expression vector(s) and 450 nM ssODN. Cells were electroporated using the following parameters - Pulse voltage: 1650V, Pulse width: 10 ms, Pulse number: 3 – and plated onto duplicate wells of Matrigel-coated 6-well culture plates containing 2 mL culture media (DMEM + 10% FBS, 2 mM GlutaMax, 100 U/mL penicillin, 100 μg/mL streptomycin, 0.25 μg/mL amphotericin B) and maintained at 37 °C with 5%CO2. 48 h post-transfection, cellular genomic DNA was extracted using QuickExtract DNA solution (Epicentre) and the Gaac.1826 target locus was PCR amplified and purified using DNA Clean & Concentrator (Zymo Research) and Sanger sequencing was performed (Retrogen). spCas9 nuclease activity and homology-directed repair (HDR) knock-in efficiency were determined by Tracking of Indels by Decomposition (TIDE)17 (link) or Tracking of Insertion, Deletions, and Recombination events (TIDER)18 (link) analysis of DNA sequence electropherogram files.
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2

Genomic DNA Extraction and Sequencing

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The genomic DNA from cell pellets was extracted using QuickExtract DNA solution (Epicenter, Chicago, IL). Genomic PCR was performed using Herculase II Fusion DNA polymerase (Agilent Technologies, Santa Clara, CA) or Q5 High-Fidelity DNA polymerase (New England BioLabs, Ipswich, MA) with primers listed in the Supplementary Table S4. The PCR products were subjected to direct DNA sequencing service (ACGT, Inc., Wheeling, IL & GENEWIZ, Cambridge, MA).
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