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Ultimate 3000 semiprep hplc

Manufactured by Thermo Fisher Scientific
Sourced in United States

The UltiMate 3000 Semiprep HPLC is a high-performance liquid chromatography system designed for semipreparative chromatographic separations. It features a modular design and includes a pump, autosampler, column compartment, and UV-Vis detector.

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3 protocols using ultimate 3000 semiprep hplc

1

Automated Synthesis and Purification of Peptides

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Peptides were produced on solid phase (Fmoc-Rink Amide MBHA, capacity = 0.67 mmol/g) resin in an automated peptide synthesizer (Syro-I, Biotage, Uppsala, Sweden) using standard Fmoc/tBu strategy with DIC/HOBt coupling reagents. Cf was coupled to the N-terminus of the peptides by using DIC/HOBt coupling method. Peptides were cleaved from the resin with TFA/H2O/TIS (9.5:2.5:2.5, v/v) mixture (2 h, RT). After filtration, compounds were precipitated in cold diethyl ether, centrifuged (4,000 rpm, 5 min) and freeze-dried from water.
RP-HPLC purification was performed on an UltiMate 3000 Semiprep HPLC (Thermo Fisher Scientific) with a Phenomenex Jupiter Proteo C-12 column (250 × 10 mm) using gradient elution, consisting of 0.1% TFA in water (eluent A) and 0.1% TFA in acetonitrile/water = 80/20 (v/v) (eluent B).
Purified peptides were analyzed by LC-MS using a Thermo Scientific Q Exactive Focus Hybrid Quadrupole-Orbitrap Mass Spectrometer. For the separation, a Waters Acquity UPLC BEH C18 (1.7 µm, 150 × 2.1 mm) column was used with a flow rate of 0.3 ml/min.
Residual TFA and TFA counter-ion was removed by using an acetate-exchange resin. For the detailed description, see Supplementary Information 1.1).
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2

Purification of Peptides and Conjugates

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The purification of crude peptides and conjugates was performed on an UltiMate 3000 Semiprep HPLC (Thermo Fisher Scientific, Waltham, MA, USA) with a Phenomenex Jupiter Proteo C-12 column (250 × 10 mm) using gradient elution, consisting of 0.1% TFA in water (eluent A) and 0.1% TFA in acetonitrile/water = 80/20 (v/v) (eluent B).
The crude and purified peptides were analyzed by analytical RP-HPLC (Shimadzu prominence HPLC system) with a Phenomenex Jupiter Proteo C-12 column (150 × 4.6 mm) using gradient elution, consisting of 0.1% TFA in water (eluent A) and 0.1% TFA in acetonitrile/water = 80/20 (v/v) (eluent B).
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3

Synthesis and Purification of Palmitoylated Peptides

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Peptides were prepared on TGS Wang resin (250 mg, capacity = 0.27 mmol/g) in an automated peptide synthesizer (Syro-I, Biotage, Uppsala, Sweden) using Fmoc/tBu strategy with DIC/HOBt coupling reagents. Palmitic acid was coupled on the N-terminus of the peptides using DIC/HOBt coupling reagents. After the synthesis was complete, peptides were cleaved from the resin with TFA in the presence of scavengers (H2O and TIS, 3–3 v/v%). Crude products were precipitated in cold diethyl ether, centrifuged (4000 rpm, 5 min), and lyophilized from H2O/AcN. Palmitoylated peptides were then purified by RP-HPLC on a Phenomenex Jupiter Proteo C12 column (10 μm, 90 Å, 10 mm × 250 mm) with linear gradient elution using 0.1% TFA in H2O (eluent A) and 0.1% TFA in AcN:H2O = 80:20 (v/v) (eluent B) on an UltiMate 3000 Semiprep HPLC (Thermo Fisher Scientific, Waltham, MA, USA). Purified peptides were analyzed by RP-HPLC using an LC-40 HPLC System (Shimadzu, Kyoto, Japan) on an analytical Phenomenex Jupiter Proteo C12 column (10 μm, 90 Å, 4.6 mm × 150 mm). The flow rate was 1 mL/min, and the gradient was 5–100 B% in 20 min (UV detection at λ = 220 nm). High-resolution mass spectra were acquired by direct injection to a Thermo Scientific QExactive Focus Hybrid Quadrupole-Orbitrap Mass Spectrometer (Waltham, MA, USA). Data were analyzed by Xcalibur program (Thermo Fisher Scientific, Waltham, MA, USA).
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