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4 protocols using xp00105box

1

Western Blot Analysis of Tau Phosphorylation

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The concentrated media/ACSF with extracellular vesicle (EV) depletion were prepared in 4x Laemmli buffer and then boiled for 5 min, followed by SDS/PAGE (10% Tris-Glycine gel; XP00105BOX, Invitrogen), then transferred to a nitrocellulose membrane (10600001, Amersham). After blocking in TBST buffer (20 mM Tris-HCI, 150 mM sodium chloride, 0.1% Tween-20) containing 5% (wt/vol) nonfat dry milk for 1 h at room temperature, the membrane was incubated with primary antibodies overnight at 4°C, then with secondary antibodies for 1 h at room temperature. The following antibodies were used: Tau5 (ab80579, Abcam), AT8: anti-phospho-Tau pSer202/Thr205 (MN1020, ThermoFisher Scientific), PHF-1: anti-phospho-Tau pSer396/Ser404 Tau (from Dr. Peter Davies), β-actin (4967S, cell signaling), anti-Tubulin (ab4074, Abcam). IRDye 800CW goat anti-mouse IgG secondary antibody (P/N: 926–32210, LI-COR), IRDye 680CW goat anti-rabbit IgG secondary antibody (P/N: 926–68071, LI-COR). Membranes were visualized by Odyssey Infrared Imager (model 9120, LI-COR Biosciences), and relative optical densities of bands determined by Fiji/ImageJ software.
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2

Immunoblot Analysis of Tau and GR Proteins

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The concentrated media/ACSF with extracellular vesicle (EV) depletion were prepared in 4x Laemmli buffer and then boiled for 5 min. Samples were either dotted directly onto nitrocellulose membranes for dot blotting or separated by SDS/PAGE (10% Tris-Glycine gel; XP00105BOX, Invitrogen) and then transferred to a nitrocellulose membrane (10600001, Amersham). After blocking in TBST buffer (20 mM Tris-HCl, 150 mM sodium chloride, 0.1% Tween-20) containing 5% (wt/vol) nonfat dry milk for 1 h at room temperature, the membrane was incubated with primary antibodies overnight at 4 °C, then with secondary antibodies for 1 h at room temperature. The following antibodies were used: Tau5 (ab80579, Abcam), AT8: anti-phospho-Tau pSer202/Thr205 (MN1020, ThermoFisher), PHF-1: anti-phospho-Tau pSer396/Ser404 Tau (from Dr. Peter Davies), p-GR (4161 S, Cell Signaling), GR (12041 S, Cell Signaling), β-actin (4967 S, cell signaling), anti-Tubulin (ab4074, Abcam). IRDye 800CW goat anti-mouse IgG secondary antibody (P/N: 926-32210, LI-COR), IRDye 680CW goat anti-rabbit IgG secondary antibody (P/N: 926-68071, LI-COR). Membranes were visualized by Odyssey Infrared Imager (model 9120, LI-COR Biosciences), and relative optical densities of bands determined by Fiji/ImageJ software. Full immunoblots used in the figures of this manuscript are shown in Fig. S4.
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3

Western Blotting Procedure with Antibody Detection

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For western blotting, a total of 10 μg of protein was run on Novex 10% Tris-Glycine mini gels (ThermoFisher XP00105BOX). Protein was transferred to a PVDF membrane (Bio-Rad 1620177) using the Pierce G2 Fast Blotter. Blots were probed according to the supplier’s recommended protocol for the following antibodies: anti-actin (Sigma A2066), anti-FLAG (Sigma F1804), and anti-StrepII (MBL International catalog #M211–3). Secondary antibodies (anti-mouse IgG-peroxidase and anti-rabbit IgG-peroxidase; Sigma A0168 and A0545, respectively) were used at 1:10,000 dilution. Signal was detected using SuperSignal West Pico Chemiluminescent Substrate kit (ThermoFisher 34,078), exposed to Carestream Biomax XAR Film (Sigma 1,651,454), and developed using a Konica SRX-101A tabletop processor.
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4

Quantification of Protein and Collagen Binding to RAD16-I Hydrogels

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To test protein binding to cell-free RAD16-I gels, 100 µL of a 0.3% peptide solution was loaded into tissue culture inserts, gelled for 1 h with 10% FBS in PBS or PBS alone (negative control), and then washed with PBS overnight several times. Gels were disrupted in RIPA buffer, and bound protein content was quantified with a BCA assay (39228, Serva). To test collagen binding to RAD16-I gels, 10 μL of a 3 mg/mL collagen solution (A1048301, Gibco) was mixed with 90 μL of 10% sucrose and afterwards mixed with an equal volume of a 0.6% RAD16-I peptide solution. Further, 40 μL of this solution was induced to self-assemble with PBS for 1 h, and then washed with PBS overnight several times. Gels were disrupted by vortexing in 2x SDS sample loading buffer (LC2676, Thermo Fisher, Waltham, MA, USA), mixed with β-mercaptoethanol at 10% final concentration and boiled for 5 min at 95 °C. Samples (20 μL) were loaded in 10% Tris-Glycine pre-cast protein gels (XP00105BOX, Thermo Fisher) and run by applying 120 V for 90 min. Finally, gels were stained with Coomassie blue and distained overnight.
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