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Accela uplc

Manufactured by Thermo Fisher Scientific
Sourced in United Kingdom, United States

The Accela UPLC is an ultra-high-performance liquid chromatography system designed for efficient separation and analysis of a wide range of chemical compounds. It utilizes advanced technology to provide high-resolution, high-speed, and high-sensitivity liquid chromatography performance.

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7 protocols using accela uplc

1

UPLC-MS/MS Quantification of 3'dATP

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The analytes were resolved using
an ultraperformance liquid chromatography system (Accela UPLC, Thermo
Scientific, U.K.) equipped with a Biobasic A ×
5 μm, 50 × 2.1 mm column (Thermo Electron Corporation,
Murrieta, CA) and mobile phase consisting of a mixture of 10 mM NH4Ac in ACN/H2O (30:70 v/v), pH 6.0 (A), and 1 mM
NH4Ac in ACN/H2O (30:70 v/v), pH 10.5 (B). The
mobile phase gradient employed comprised buffer A = 95% at 0–0.5 min, from 95 to 0% over 1.25 min, held at
0% for 1.75 min, from 0 to 95% over 0.1 min, ending with 95% for 2.9
min, all at a flow rate of 500 μL/min. Eluting compounds of
interest were detected using a triple-stage quadrupole Vantage mass
spectrometry system (Thermo Scientific, U.K.) equipped with an electrospray
ion source. Samples were analyzed in the Multiple Reaction Monitoring,
negative-ion modes at a spray voltage of 3000 V. Nitrogen was used
as sheath and auxiliary gas at flow rates of 50 and 20 arbitrary units,
respectively. Argon was used as collision gas with a pressure of 1.5
mTorr. The optimum transitional daughter ions mass and collision energy
of each analyte were as follows: 3′dATP 490.1 → 392.1
(collision energy 19 V) and the internal standard ChloroATP 539.9
→ 442.2 (collision energy 24 V).
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2

Lipid Profiling by Negative Ion LC/MS

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Negative ion electrospray ionization LC/MS analysis of lipid extracts was performed on a Thermo Scientific (San Jose, CA, USA) Vantage TSQ mass spectrometer with Thermo Accela UPLC operated by Xcalibur software. Lipids were separated on a Restek 150 × 2.1 mm (5 µm particle size) Viva C4 column under established conditions. The tetramyristoyl CL internal standard (m/z 1,240, [M-H]-) elutes at 13.6 minutes while tetralinoleoyl CL (m/z 1,448, [M-H]-) elutes at 14.4 minutes. Complete details of CL analysis by LC/MS are provided elsewhere[16 (link), 21 (link)–24 (link)].
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3

Automated Peptide Synthesis and Purification

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The peptide synthesis was performed on an automated peptide synthesizer, Gilson Quad-Z. Purification of peptides was performed on a preparative chromatography system, HPLC Gilson, consisting of a gradient pump (322), detector (155), and a fraction collector (GX 271) under the control of Trilution® software (v.4). Analysis of purity was performed on a chromatograph (Thermo Accela UPLC) with an ion trap mass spectrometer detector (Thermo Finnigan LCQ Deca XP Plus). The following chemicals were used: a block-copolymer carrier, Tentagel HL, with the terminal amino group modified with carboxy-trityl linker (Tentagel-TRT), Fmoc-protected amino acids (Iris Biotech), 4-methylpiperidine and collidine (Acros Organics), HATU (Sigma-Aldrich), and trifluoracetic acid (Solvay).
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4

Quantification of Arginine-Citrulline Metabolites

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100 µl culture medium samples were extracted with 300 µl ice-cold methanol containing the internal standards (13C6 L-arginine and D4 L-citrulline). After centrifugation, methanolic extracts were evaporated to dryness. Then, dried extracts were reconstituted in 85% acidified acetonitrile and injected into the UPLC-MS/MS system. Analytes were resolved using an Accela UPLC (Thermo Scientific, UK) equipped with 1.7 µm HILIC Kinetex 2.1 × 50 mm UPLC column (Phenomenex, UK) and a mobile phase gradient of buffer A (water + 0.1% formic acid) and buffer B (acetonitrile + 0.1 formic acid) at a flow rate of 250 µl/min. Eluting compounds of interest were detected using a TSQ Vantage mass spectrometry system (Thermo Scientific, UK) in positive-ion mode. The optimum transitional daughter ions mass of each analyst was as follows: argininosuccinate m/z 291.1 → 70.2, arginine m/z 175.1 → 70.2, citrulline m/z 176.1 → 70.2, 13C6 arginine m/z 181.0 → 74.2, and D4 citrulline m/z 180.2 → 74.2. Plasma argininosuccinate was measured using untargeted metabolomics assay as described previously [26 (link)].
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5

Quantification of Lipid Profiles in Mouse Hearts

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The abundance of PA, DAG, triglyceride, and CL in mouse hearts was determined as described with modification (22 (link)). The LC-MS analysis was performed either with a Shimadzu 10A HPLC system and a Shimadzu SIL-20AC HT auto-sampler coupled to a Thermo Scientific TSQ Quantum Ultra triple quadrupole (TQ) mass spectrometer operated in selected reaction monitoring mode or with a Thermo Fisher Scientific Vantage TSQ mass spectrometer with Thermo Accela UPLC operated by Xcalibur software using selected ion monitoring mode. PA-(14:0)2, DAG-(15:0)2, triglyceride-(17:0)3, and CL-(14:0-14:0)2 were used as internal standards. Quantification of lipids was based on the ratio of the peak area of the analyte to the internal standard. For example, the ratio of CL-(18:2/18:2)2 and CL-(14:0-14:0)2 is used for measurement of CL-(18:2/18:2)2.
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6

Metabolic Profiling of [3H]-MMAE

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To characterize the metabolic profile of [3H]-MMAE, the bile samples were analyzed across time points that covered the majority of the radioactivity (up to 6 h with 75% of the total radioactivity injected) excreted. Due to the low radioactivity recovered in the urine, the urine samples were analyzed for up to 8 h. Both the bile and urine samples were investigated using Accela UPLC coupled with a Linear Trap Quadrupole (LTQ)-Orbitrap Velos system (Thermo Scientific, San Jose, CA, USA) and an online β-RAM 5C radiodetector (Lab Logics, Tampa, FL, USA) for radioprofiling.
Chromatographic separation was performed on a Luna C18 column (150 × 4.6 mm, 3 μm particle size, Phenomenex, Torrance, CA, USA) with mobile phases A (0.1% formic acid in water) and B (0.1% formic acid in acetonitrile) at a constant flow rate of 1 mL/min. The gradient was as follows: initial holding at 5% B for 2 min, increased to 15% B at 4 min, 42% B at 44 min, 75% B at 49 min, 95% B at 50 min, holding at 95% B until 55 min, decreasing to 5% B at 55.1 min, and then column re-equilibration until 60 min. The flow was split 3:1 post-column for radiomeasurements and mass spectrometry, respectively. As the majority of the metabolite was the intact [3H]-MMAE, only the intact [3H]-MMAE was quantified.
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7

Cardiolipin Analysis by Negative Ion ESI LC-MS

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Negative ion electrospray ionization (ESI) LC-MS analysis of extracted CL was conducted on a Thermo Scientific (San Jose, CA) Vantage TSQ mass spectrometer with Thermo Accela UPLC operated by Xcalibur software. Separation of lipid was achieved by a Restek 150 × 2.1 mm (5 µm particle size) Viva C4 column at a flow rate of 260 µL/min. The mobile phase contained 10 mM ammonium formate in solvent A: acetonitrile:water (60:40, v:v); solvent B: 2-propanol:acetonitrile (90:10, v:v); and a gradient elution in the following manner was applied: 68% A, 0–1.5 min; 68−55% A, 1.5–4 min; 55−48% A, 4–5 min; 48−42% A, 5–8 min; 42−34% A, 8–11 min; 34−30% A, 11–14 min; 30−25% A, 14–18 min; 25−3% A, 18–23 min; 3−0% A, 25–30 min and kept at 0% A for 5 min. The tetramyristoyl CL internal standard (m/z 1240, [M – H]) was eluted at 13.6 min, and the tetralinoleoyl CL (m/z 1448, [M – H]) eluted at 14.4 min. Calculation of tetralinoleoyl CL content was based on the ratio of peak area of (18:2/18:2)2-CL and (14:0/14:0)2-CL from lipid extracts of cells incubated with PBS and CL-ND.
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