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549 protocols using western lightning plus ecl

1

Western Blot Analysis of BLM and ATM Proteins

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For Western blot analyses, 4–9 × 106 cells were seeded in 100 mm plates and incubated overnight at 37 °C prior to a 4 h formaldehyde treatment (300 μM). For Western blot analyses of BLM protein, cells were harvested at indicated time points and disrupted in a lysis buffer (50 mM Tris–HCl, pH 8.0, 0.5% Nonidet P-40, 5 mM EDTA, 150 mM NaCl, 1 mM pepstatin A, and 1 mM PMSF). For detection of BLM and ATM proteins, aliquots of total cell lysate (35 or 50 μg, respectively) were run on a 3–8% NuPAGE® Tris-Acetate Gel (Life Technologies), followed by transfer onto PVDF membranes. The membranes were immunoblotted independently with the following primary antibodies: 3 h incubation with mouse monoclonal anti-ATM (GeneTex 2C1, 1:1000 dilution), overnight incubation with rabbit polyclonal anti-BLM (Santa Cruz H-300, 1:1000 dilution), and 1 h incubation with mouse monoclonal anti-α-tublin (Sigma clone B-5-1-2, 1:10,000 dilution). The membranes were then incubated for 1 h with appropriate secondary antibodies conjugated to horseradish peroxidase, and proteins were detected by the enhanced chemiluminescence detection system (Western LightningTM Plus-ECL from Perkin Elmer or Clarity Western ECL Substrate from Bio-Rad).
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2

Western Blot Protein Detection Protocol

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Cells were lysed with RIPA lysis buffer (150 mM NaCl, 20 mM Tris-HCl [pH 7.5], 1% NP40, 0.1% SDS, 1% sodium deoxycholate, 1 μg/ml aprotinin, 10 μg/ml leupeptin, and 1 mM PMSF). Lysates containing equal amount of proteins were resolved by sodium dodecyl sulfate polyacrylamide gel electrophoresis (SDS-PAGE) and proteins were transferred to polyvinylidene fluoride membranes (Millipore). The membranes were incubated with blocking buffer containing 1% BSA or 1–5% non-fat dry milk in TBST (Tris-buffered saline with 0.1% Tween-20) at room temperature for 30–60 min and then incubated with primary antibodies diluted in blocking buffer at 4 °C for overnight. Next, the membranes were washed three times for 10 min each with TBST and then incubated with horseradish peroxidase (HRP)-conjugated secondary antibodies diluted in blocking buffer at room temperature for 1 h. After three times of 10 min-wash with TBST, the HRP signal was detected by Western LightningTM Plus-ECL (PerkinElmer Inc) or LuminataTM Crecendo (Millipore).
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3

Western Blot Analysis of Plasmid DNA Expression

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The Western blot analysis was performed to confirm the in vitro and in vivo expression of plasmid DNA as previously described [50 (link)]. Briefly, the transfected cell lysate and muscle tissue samples were mixed with 4 × sample buffer, then separated by 12% SDS-PAGE gel and transferred to polyvinylidene difluoride (PVDF) membranes (Invitrogen, USA) at 12 V for 1 h. The membrane was incubated with 5% skim milk (Fronterra, Aukland, New Zealand) in 0.1% Tween-20 in PBS (PBST) overnight at 4 °C to prevent non-specific binding. Next, the mouse anti-6-histidine antibody (Merck, Darmstadt, Germany) (diluted at 1:1000 in PBST) was applied to the membrane and incubated at 4 °C for 12 h. The rabbit anti-mouse IgG-horseradish peroxidase (1:3000 dilution in PBST; Santa Cruz Biotechnology, Dallas, TX, USA) was added to the membrane for 1 h at 25 °C. The membrane was washed five times with PBST before every successive step. After the final washes, the membranes were visualized using Western LightningTM Plus-ECL (PerkinElmer Inc., Waltham, MA, USA) using the Luminescence Fluorescence Imaging System (Syngene, Frederick, MD, USA).
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4

Western Blot Analysis of Cellular Proteins

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After treatment and at the indicated time, cells were washed once with PBS and lysed with 6 M urea buffer equipped with protease and phosphatase inhibitors (PMSF, aprotinin, pepstatin, leupeptin, sodium orthovanadate, and sodium pyrophosphate). Protein concentration was measured using Bradford reagent (Sigma-Aldrich, Germany). Equal amounts of protein (50 μg) were loaded into each well of 10% SDS-PAGE for resolving the samples. Subsequently, separated proteins were blotted onto a PVDF membrane (GE Healthcare, Germany). Membranes were then washed with TBS/tween and blocked for 3 h at room temperature with fat-free dried milk before incubation with the indicated primary antibodies at 4 °C for overnight.
Anti-β-actin and anti-vinculin antibodies were purchased from Santa Cruz Biotechnology, whereas anti-mouse and rabbit IgG horseradish peroxidase (HRP)-linked antibodies were purchased from Cell Signaling Technology.
Membranes were developed using Western LightningTM Plus-ECl (Perkin Elmer, Germany) as HRP substrate. Proteins of interest were detected using a Fujifilm LAS-3000 imaging system.
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5

Western Blot Analysis of Cellular Proteins

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After treatment, cells were harvested, washed once with PBS, and lysed using 6 M urea buffer supplemented with a cocktail of protease and phosphatase inhibitors, namely aprotinin, leupeptin, pepstatin, PMSF, sodium orthovanadate, and sodium pyrophosphate. Protein content of samples was determined using Bradford reagent (Sigma-Aldrich). SDS-PAGE was subsequently performed to resolve the samples, and proteins were then transferred onto PVDF membranes (GE Healthcare, Munich, Germany). Membranes were washed once in TBS-Tween for 5 min, and then blocked for 1 h at room temperature using 5% non-fat dry milk in TBS/Tween. Membranes were then washed once in TBS/Tween for 5 min and were incubated overnight at 4 °C with the primary antibody. Anti-VDUP1 (TXNIP) antibody was purchased from MBL, whereas anti-β-actin and anti-vinculin antibodies were purchased from Santa Cruz Biotechnology. Anti-ITCH, anti-phospho-ACC (S79), as well as anti-mouse and rabbit IgG horseradish peroxidase (HRP)-linked antibodies were purchased from Cell signaling technologies. Western LightningTM Plus-ECl (Perkin Elmer) was utilized as HRP substrate. Target proteins were detected using the Fujifilm LAS-3000 imaging system.
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6

Western Blotting with Chemiluminescent Detection

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The process of Western blotting was followed the protocol in literature37 (link). The blots were pulsed with Western LightningTM Plus-ECL (Perkin-Elmer Life Sciences) and the signals were determined by the intensity of chemiluminescence by LAS-3000 imager (Fujifilm, Tokyo, Japan).
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7

Recombinant Trefoil Factor 1 Expression

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The rTFF1 produced by E. coli BL21(DE3) (pET-TFF1) and B. choshinensis (pNCMO2-TFF1) at various time expression intervals were analyzed by Tricine-SDS-PAGE [37 (link)]. The yield of rTFF1 was estimated by comparing the density of the rTFF1 bands to standards (serial dilutions of 103 mg/L purified rTFF1) on SDS-PAGE gels analyzed using Gel-Pro AnalyzerTM version 3.0 (Total-Integra Technology Co., Ltd, Taipei, Taiwan). The electrophoresis gel was then transferred into PVDF membranes (Millipore, Darmstadt, Germany). The mouse anti- His•tag (Millipore, Darmstadt, Germany) and goat anti-mouse HRP (Millipore, Darmstadt, Germany) were used to immunize the rTFF1. The presentations of rTFF1s were then stained with Western LightningTM Plus-ECL (Perkin Elmer, Inc., USA), analyzed by Fusion-Capt advance analysis software (Vilber Lourmat, France).
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8

Co-Immunoprecipitation of FLAG-/GFP-tagged Proteins

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Embryos were injected 4x at the four-cell stage and animal caps were prepared at stage 9. At stage 28, 15 caps per condition were pooled in 100 µl TNMEN-150 lysis buffer (150 mM NaCl, 1 mM EDTA, 2 mM MgCl2, 0.1% Nonidet-P40, 50 mM This pH8.0, 1x Roche cOmplete (#04693116001)). Co-Immunoprecipitation was performed following standard protocol, using 10 µl magnetic beads (Dynabeads M-280 Sheep Anti-Mouse IgG; #11202D) and 0.4 µl monoclonal mouse anti-FLAG antibody (Sigma; #F3165) per sample for 2 hr at 4°C. 10% of sample was removed prior to treatment with antibody/magnetic beads (input), and 30 µl of sample was removed after the treatment (supernatant). SDS-Page and Western blotting were performed using standard procedures using a 10% separating gel, Milipore Immobilon-FL PVDF membrane (#IPFL00010), TBS containing 0.1% Tween-20 (TBSw) for washing, TBSw plus 5% non-fat dry milk for blocking. FLAG-/GFP-tagged proteins were detected using monoclonal mouse anti-FLAG antibody (1:2000, Sigma; #F3165), polyclonal rabbit anti-GFP antibody (1:2000, Abcam; #ab290), anti-rabbit/-mouse HRP conjugated secondary antibodies (1:5000, Bio-Rad; Goat anti-Rabbit IgG #1706515 and Goat anti-Mouse IgG #1706516), Western Lightning Plus-ECL (Perkin Elmer; #NEL103E001EA), and Amersham Hyperfilm ECL (GE Healthcare Life Sciences; #28906836).
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9

Cell Lysis and Immunoprecipitation Procedure

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Cells were harvested at 60–70% of confluency in cold PBS and lysed with Laemmli buffer (2x concentrated) supplement by 2 mM PMSF, 10 μg/ml aprotinin, 10 μg/ml leupeptin, 5 mM EGTA, 1 mM EDTA, 2 mM Na4P2O7, 5 mM NaF and 5 mM Na3VO4. Samples containing equal amounts of protein per lane were loaded, resolved in SDS–PAGE and then transferred onto nitrocellulose membrane. The membranes were incubated for 1 h in 5% skimmed milk and probed overnight with specific primary antibodies at 4°C. Secondary antibodies conjugated with HRP (Sigma-Aldrich) and Western Lightning Plus-ECL (PerkinElmer) were used to visualize specific proteins. For immunoprecipitation experiments, cells were lysed in lysis buffer containing 1% Triton X-100. Supernatant was incubated with 2 μg of appropriate antibody overnight at 4°C. The samples were incubated with protein A or protein G beads (Santa Cruz Biotechnology, sc-2001, sc-2002) according to the manufacturer's instructions. Immunocomplexes were eluted from beads with Laemmli buffer and analysed by western blotting.
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10

Chemiluminescent Immune Complex Detection

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After three washes, the immune complexes were detected by chemiluminescence (Western Lightning Plus-ECL, Perkin-Elmer, MA, USA) and visualized by autoradiography on BIOMAX type film (Kodak, Rochester, NY, USA).
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