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13 protocols using dhr 123

1

Measuring Intracellular and Mitochondrial ROS

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Intracellular and mitochondrial reactive oxygen species (ROS) were respectively examined using dihydroethidium (DHE, Cayman, USA)17 (link) and dihydrorhodamine 123 (DHR123, Cayman, USA).18 (link) Cell were loaded with 5 µM DHE and 10 µM DHR123 for 30 min and then treated with amyloid beta alone or in combination with NOX inhibitors and/or MTAs. After treatments, ROS generation was monitored in a SpectraMax Gemini XPS microplate reader (Molecular devices, USA) with excitation at 530 nm and emission at 590 nm for DHE or excitation at 500 nm and emission at 536 nm for DHR123. Each fluorescence value was obtained by subtracting the mean background value of the sham-treated control cultures. In some cases, cultures were viewed under fluorescence microscopy and photographed.
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2

Leucocyte Oxidative Stress Evaluation

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Blood was collected from healthy human donors (n = 4; Etablissement Français du Sang, Clermont-Ferrand, France). Leucocytes were obtained by hemolytic shock and prepared as previously described [13 (link)]. Leucocytes were incubated with or without the LS-E (50 µg/mL) and dihydrorhodamine 123 (DHR 123, 1 μM, Cayman Chemical Company, Ann Arbor, MI, USA), and stimulated, or not, by 1 µM phorbol 12-myristate 13-acetate (PMA) for 90 min. The fluorescence intensity of the formed rhodamine 123 was recorded every 5 min for 90 min (excitation/emission: 485/538 nm) using the Spark reader (TECAN Lyon, France).
Concurrently, cells from the same donors were placed in 96-well plates (106 cells/mL), incubated with the extract (10, 25, 50 and 100 µg/mL) for 24 h and then resazurin (25 µg/mL) was added to track their viability (Appendix A). Fluorescence (excitation/emission: 544/590 nm) was recorded after 2 h using the Spark microplate reader (TECAN) (Appendix A).
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3

Reactive Oxygen Evaluation in Murine Leukocytes

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Anti-coagulated blood samples from recipient mice were diluted 10-fold in HBSS containing Ca2+/Mg2+. Samples were then loaded for 15 min with 2.5 μg/ml dihydrorhodamine 123 (DHR123; Cayman Chemical), a probe that fluoresces upon exposure to reactive oxygen intermediates. After DHR123 loading, diphenyleneiodonium (DPI; Sigma Aldrich) was added to the appropriate samples at a concentration of 10 μM just prior to stimulation of samples with either heat-killed S. aureus (HKSA) or 100 ng/ml phorbol 12-myristate 13-acetate (PMA; Sigma-Aldrich). Samples were stimulated for either 15 min (PMA) or 30 min (HKSA). At the end of stimulation, samples were centrifuged to pellet cells, subjected to red blood cell lysis as described above, and then stained on ice with antibodies against CD45.2, CD45.1, and Ly6G. Samples were analyzed by flow cytometry as described above.
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Measuring Neutrophil Respiratory Burst

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The production of reactive oxygen species (ROS) was evaluated by flow cytometry using the fluorogenic substrate dihydrorhodamine 123 (DHR 123, Cayman Chemical Company, Ann Arbor, MI, USA) as an indicator of production of ROS. Briefly, 5×105 neutrophils were incubated with 1μm of DHR123 for 15 minutes and after infected with L. (V.) braziliensis promastigotes or PMA (10ng/mL) plus ionomycin (500ng/mL) or buffer was added. Control samples containing no stimulus were runs in parallel. After 15 minutes at 37°C, 5% CO2, cells were washed in PBS and analyzed by flow cytometry. The neutrophil population was selected based on forward and side scatter followed by DHR123 fluorescence to determine the frequency and mean of fluorescence intensity (MFI) of double positive cells CD15+DHR+. Separate controls verified of this population, corresponded to neutrophils according to CD15+ surface stain. The FACS strategy to assessment of respiratory burst is shown in figure 2A.
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5

Neutrophil Respiratory Burst Assay

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The production of reactive oxygen species (ROS) was evaluated by flow cytometry using the fluorogenic substrate dihydrorhodamine 123 (DHR 123, Cayman Chemical Company, Ann Arbor, MI, USA) as an indicator of production of ROS. Briefly, 5 × 105 neutrophils were incubated with 1 μM of DHR123 for 15 minutes and after infected with L. (V.) braziliensis promastigotes or PMA (10 ng/mL) plus ionomycin (500 ng/mL) or buffer was added. Control samples containing no stimulus were runs in parallel. After 15 minutes at 37°C, 5% CO2, cells were washed in PBS and analysed by flow cytometry. The neutrophil population was selected based on forward and side scatter followed by DHR123 fluorescence to determine the frequency and mean of fluorescence intensity (MFI) of double positive cells CD15+DHR+. Separate controls verified of this population, corresponded to neutrophils according to CD15+ surface stain. The FACS strategy to assessment of respiratory burst is shown in Figure 2A.
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6

Measurement of IL-1β, LDH, and Caspase-1 Activity

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The IL-1β levels in the cellular supernatants and peritoneal lavages were measured using an enzyme-linked immunosorbent assay (ELISA) kit (DY201 or DY401, R&D SYSTEMS). LDH secretion was analyzed using an assay kit (BCT-LDHP, BIOMAX, Seoul, Republic of Korea). For the ROS measurement, LPS-primed BMDMs (1.25 × 105 cells/well in a 96-well-black plate) were treated with dihydrorhodamine 123 (DHR123, CAYMAN CHEMICAL, Ann Arbor, MI, USA) in the presence of rotenone (160 μM) and JC for 6 h. The caspase-1 activity was determined using mouse recombinant caspase-1 (one unit per reaction, BIOVISION, Milpitas, CA, USA) and a caspase-1 fluorometric assay kit (BIOVISION) in the presence of JC or the pan-caspase inhibitor (Z-VAD-FMK, 10 μg/mL; R&D SYSTEMS). The recombinant caspase-1 was co-incubated JC or Z-VAD-FMK in the reaction buffer containing YVAD-AFC for 1 h at 37 °C according to the manufacturer's protocol. The plates were analyzed using a multi-microplate spectrophotometer (Synergy H1 Hybrid Multi-Mode Reader, BIOTEK, Winooski, VT, USA).
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7

Subcellular Calcium Regulation Assay

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ICM contained (mM): KCl (120), NaCl (10), KH2PO4 (1), HEPES (20), sodium succinate (2), EGTA (1) and KOH (pH 7.1). The free [Ca2+] was adjusted to the desired level by varying the ratio of Ca2+/HEDTA, calculated using maxchelator (C Patton, Stanford University, CA, USA). Chemical reagents were purchased from Sigma-Aldrich (St Louis, MO, USA), except for DHR 123 (Cayman Chemical, Ann Arbor, MI, USA), CDNB (Alfa Aesar, Ward Hill, MA, USA) and Rhod-2 AM, TMRE and MitoSOX (Life Technologies, Grand Island, NY, USA). Recombinant His-tagged Mcl-1 was purchased from Proteintech Group, Inc. (Chicago, IL, USA). Peptides based on the human VDAC1 sequence were synthesized by Biomatik (Wilmington, DE, USA): control (LVLGYEGWLA), N-terminal (GLGKSARDVFTKGYGFG) and L14-15 (LAWTAGNSNTR). Cell-permeant versions were tagged with antennapedia-homeodomain-derived antennapedia (Antp; RQIKIWFQNRRMKWKK) at the carboxyl-terminal of each peptide.
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8

Lipid ROS and ROS Accumulation Assay

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L929sAhFas cells and BMDMs were seeded in 24-well suspension plates (0.1mln/ml and 0.4mln/ml accordingly) and stimulated for cell death. One hour before each time point, fluorescent probes were added to proper wells: 0.5 μM C11-BODIPY (ThermoFisher, MA, USA) or 1 μM DHR-123 (Cayman Chemical, MI, USA) and 0.5 μM of DRAQ7 cell death stain (BioStatus, Shepshed, UK). Lipid ROS and ROS accumulation was measured at specific time points using BDFortessa. Fluorescence was collected in B530 (C11-BODIPY and DHR123) and R780 (DRAQ7) channels. Only fluorescence of not permeabilized cells was analyzed. Gating strategy is presented in supplementary materials (Supplementary Fig 1).
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9

Neutrophil Respiratory Burst Measurement

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Neutrophil respiratory burst was assessed based on oxidation of the fluorescent dihydrorhodamine 123 probe (DHR 123; Cayman) as previously described (Sarantis and Gray-Owen 2012 (link)). In brief, MPRO 2.1 cells were plated in 24-well dishes and grown until reaching 80% confluency; at that point, the medium was removed and the cells were then exposed to 50 μg AgNP/ml for 24 h. Later the cells were then washed with calcium (Ca2+)-free Hanks balanced salt solution (HBSS) and re-suspended in DHR 123 (10 μM)-containing HBSS (with Ca2+) for 15 min at 37 °C, protected from any light. The cells were then treated with 1 μg PMA/ml (or medium for basal activity measures) for 15 min at 37 °C, again protected from any light. Cells were then collected, centrifuged/washed, and then the total fluorescence was measured in the BD Accuri™ C6 flow cytometer. Cells were gated to remove any debris or dead cells; 10, 000 events were counted.
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10

Evaluating Leukocyte Oxidative Stress

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Blood was collected from healthy human volunteers (n = 3–6; Etablissement Français du Sang, EFS, Clermont-Ferrand, France). Donors gave their written informed consent for the use of blood samples for research purposes under EFS contract n°16-21-62 (in accordance with the following articles L1222-1, L1222-8, L1243-4 and R1243-61 of the French Public Health Code). Blood leukocytes were obtained by hemolytic shock using ammonium chloride solution. Leucocytes were then washed with RPMI 1640 medium (GIBCO, ThermoFisher Scientific), centrifuged and suspended in supplemented RPMI (fetal bovine serum (FBS) 10%, gentamicin 50 μg/mL and glutamine (Gln) 2 mM). Cells were placed in 96-well plates (Cell Wells™, Corning, NY, USA), incubated with the extracts or the compounds and dihydrorhodamine 123 (DHR 123, 1 μM, Cayman Chemical Company, Ann Arbor, MI), and stimulated, or not, by 1 µM phorbol myristate acetate (PMA) for 60 min. The fluorescence intensity of rhodamine 123, which is the product of dihydrorhodamine 123 oxidation by ROS, was recorded (excitation/emission: 485/538 nm) using a microplate fluorometric reader (Tecan Spark®, Mämmedorf, Switzerland) [33 (link),34 ].
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