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82 protocols using ethylene diamine tetraacetic acid (edta)

1

Murine Metabolic Phenotyping Protocol

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Fresh fecal samples were collected from individual mice one week before necropsy (i.e. after 7 weeks of experimental feeding at the age of 12 weeks). At the age of 13 weeks, all mice were fasted for 6 h prior to sampling. Blood from the tail vein was used to directly measure fasting glucose (Accu-check, Aviva, Indianapolis, IN, USA) and to prepare serum for insulin measurement. Mice were then sacrificed via carbon dioxide asphyxiation. Blood was collected via cardiac puncture and mixed with either a combination of DPPIV inhibitor (Millipore, Billerica, MA, USA), a protease inhibitor cocktail (Sigma, Saint-Louis, MO, USA), and EDTA (Sarstedt, Nümbrecht, DE), or with EDTA only. After centrifugation (13,000 g, 4°C, 3 min), plasma was aliquoted and stored at −80°C until analysis. Organs were dissected, weighted and either immediately snap-frozen in liquid nitrogen or fixed in 4% paraformaldehyde for 48 h and then stored in 70% ethanol at room temperature. Epididymal, mesenteric and subcutaneous white adipose tissues (WAT) were weighed and the sum of all three tissues, hereon referred to as WAT mass, was calculated. Cecal contents were aliquoted into sterile Eppendorf tubes and immediately snap-frozen in liquid nitrogen. Frozen samples were stored at −80°C and shipped on dry ice when necessary.
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2

Plasma Catecholamine Measurement Protocol

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For EPI and NE assessment, venous blood was drawn into EDTA (ethylenediaminetetraacetic acid)-coated monovettes (Sarstedt, Numbrecht, Germany). Blood samples were taken at baseline, i.e. before the first infusion, and 1 min after the end of the second infusion (see Figure 2).
After immediate centrifugation at 2000g and 4°C for 10 min, plasma was stored at - 80°C until analyses. Plasma EPI and NE levels were determined by means of high-pressure liquid chromatography and electrochemical detection after liquid-liquid extraction in the Laboratory for Stress Monitoring, Göttingen, Germany with inter- and intra-assay CVs <5% and a lower detection limit of 12 pg/ml. Undetectable EPI levels were replaced by half the detection limit.
In three HT and one NT, NE and/or EPI levels were missing because of technical problems with high-pressure liquid chromatography.
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3

In vivo and in vitro glycerol release

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In vivo experiments. Overnight-fasted mice were injected i.p. with JM-00266 (mg·kg−1) or vehicle. Four hours later, mice were injected i.p. with the specific ß3-adrenergic receptor agonist, BRL37344 (5 mg·kg−1). Blood samples (~25 µL) were collected from tails in tubes containing EDTA (Sarstedt, Nümbrecht, Germany) at times 0, 15, 30, 45 and 60 min after BRL37344 injection to measure plasma glycerol appearance using a colorimetric assay (glycerol FS, DiaSys, Condom, France).
In vitro experiments. Overnight-fasted mice were injected i.p. with JM-00266 (mg·kg−1) or vehicle. Four hours later, mice were anesthetized with pentobarbital (50 mg·kg−1) and epididymal adipose tissue was collected, rinsed in a warm medium (DMEM-HAM/F12) supplemented with 1% BSA, and dissected into ~10 mg pieces. Then, 5–6 explants were incubated in a 5% CO2 atmosphere at 37 °C under slight agitation in 1 mL of the same medium. Free glycerol in the culture medium was determined after 1 h of incubation using a colorimetric assay (glycerol FS, DiaSys).
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4

Preparation and Characterization of 1% Hematocrit RBC Suspension

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Blood was collected into EDTA-containing tubes ( 1.6 mg/mL EDTA, SARSTEDT, Nümbrecht, Germany) with informed consent from three healthy male voluntary donors (age 28–31 years). It was centrifuged for 5 min at 3000× g to separate RBCs and plasma. Sedimented RBCs were washed three times with a phosphate-buffered saline solution (Gibco PBS, Fisher Scientific, Schwerte, Germany). Finally, a hematocrit concentration of 1%Ht was adjusted in a PBS solution that contained 1 g/L bovine serum albumin (BSA, Sigma-Aldrich, Taufkirchen, Germany). The viscosity of the PBS/BSA solutions at 20° C was approximately 1.2 mPa s [56 (link)], similar to the viscosity of human blood plasma. Since we do not observe significant inter-individual variations in the results, data were averaged between the three donors.
Blood withdrawal, sample preparation, and microfluidic experiments were performed according to the guidelines of the Declaration of Helsinki and approved by the ethics committee of the “Ärztekammer des Saarlandes” (permission number 51/18).
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5

Plasma Lipid Extraction and Quantification

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Venous blood samples were obtained from the antecubital vein into vacutainer tubes containing EDTA (Sarstedt, Leicester, UK). Plasma was separated after centrifugation at 1200 × g for 30 min at 4°C within 60 min of collection and immediately transferred into 7 mL Kimble scintillation vials (Kinesis, St. Neots, UK) and stored as 2 mL aliquots at −80°C prior to plasma lipid extraction and quantification.
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6

Cattle Blood Collection and Analysis

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Blood was collected from the jugular vein of 392 cattle directly into blood collection tubes containing EDTA (Sarstedt, Nürnbrecht, Germany). The collected blood was centrifuged at 3000× rpm for 15 min. The upper layer containing plasma and the buffy coat was collected separately in 1.5 mL cryotubes. NAPA was added to the buffy coat resulting in a 1:4 final dilution. The PCV of each blood sample was measured following centrifugation in heparinised haematocrit capillary tubes at 12,000× rpm for 5 min (haematocrit centrifuge from Hawksley, UK). An animal with a PCV value below 25% was considered to be anaemic [11 (link)].
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7

Plasma Insulin and C-peptide Assay

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Blood was collected with capillary tubes coated with EDTA (Sarstedt) and the blood was centrifuged to collect plasma from overnight-fasted mice, as well as 15 and 30 min after glucose injection. Five to ten microliters of plasma were analyzed by ELISA to measure insulin and c-peptide (ALPCO), as well as proinsulin (Mercodia).
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8

Plasma Sampling and Analysis Protocol

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We collected arterialized-venous blood samples in tubes with lithium heparin or EDTA (Sarstedt, Nümbrecht, Germany), and immediately put them on ice to minimize enzymatic reactions. We centrifuged the blood (5 min, 8000 g, 4°C) and put a portion of the plasma in 50% trichloroacetic acid matrices for deproteinization. We instantly froze the plasma and stored it at −80°C until further analyses.
Samples were analyzed in batch. We determined isotope tracer enrichments and concentrations on a liquid chromatography-electrospray ionization-tandem mass spectrometry (LC/MS-MS) system (QTrap 5500 MS (AB Sciex, Foster City, CA) with ExpressHT-Ultra LC (Eksigent Div., AB Sciex, Foster City, CA) (4 ). Enrichment was expressed as tracer (labeled substance) / tracee (unlabeled substance) ratio (TTR), and corrected for natural background abundance (cTTR). We determined plasma glucose concentrations using a COBAS c111 semiautomatic analyzer (Gluc2 Kit; Roche Diagnostics®), and plasma insulin concentrations by enzyme linked immunosorbent assay (Alpco®).
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9

Influence of Environmental Factors on RBC

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Blood of 6 healthy donors (4 men and 2 women, 25 to 51 years old) was used for experiments on the influence of hemin, different pH, UV radiation, and temperature change of RBC suspension in buffer solution. Blood sampling (150 μL) was performed in microvettes with EDTA (Sarstedt AG & Co., Numbrecht, Germany) during a prophylactic examination. We received informed consent from each donor.
For the experiments of blood storage, we used leukoreduced packed red blood cells. The pRBCs units were stored for 40 days in CPD/SAGM solution at +4 °C. Hematocrit was 60–65%. A single unit of pRBCs was 450 mL in volume. The pRBC units were obtained from Moscow blood transfusion centers. Two units of two blood groups were used in the study: O (I), A (II). On the experimental day, the sample was taken from pRBCs units without violating hermetical seal and integrity.
Research protocol was approved by the Ethics Committee of the Federal Research and Clinical Center of Intensive Care Medicine and Rehabilitology, Moscow, Russian Federation (protocol no. 2/20 of 10 June 2020).
To obtain smears for atomic force microscope scanning, 10 μL of the sample was dropped onto a slide. The RBC monolayer was prepared using a V-Sampler device (Vision, Vienna, Austria). The sample was air-dried before scanning by AFM.
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10

Whole Blood RNA Isolation Protocol

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Trunk blood was collected at the moment of decapitation into a 1.3 ml Eppendorf tube coated with EDTA (Sarstedt, Vantaa, Finland). TRIzol LS reagent (Thermo Fisher Scientific, MA, USA) was immediately added (3:1 ratio of reagent to blood) and the samples were stored at -80°C for a maximum of two weeks prior to RNA extraction [84 (link)].
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