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6 protocols using non targeting sirna pool 1

1

Targeted siRNA Silencing of P2Y2R, CAPN, DUOX

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NHBE or HBE1 cells were transfected at 60–70% confluence with ON-TARGET plus SMARTpool® siRNAs targeted against P2Y2R, CAPN1 or CAPN2 or NON-TARGETing siRNA Pool#1 as control (Dharmacon, Lafayette, CO) using DharmaFECT transfection reagent, according to the manufacturer’s instructions, 72 hrs prior to expermentation. Silencing of DUOX1 or DUOX2 was performed by transfection with the following siRNA reagents: DUOX1: (sense) GCUAUGCAGAUGGCGUGUAtt, (antisense) UACACGCCAUCUGCAUAGCtg; DUOX2: (sense) CGCAGUCAAUGUCUACAUCtt, (antisense) GAUGUAGACAUUGACUGCGtg, or with Silencer Negative Control #1 siRNA (Invitrogen). MTE cells were transfected at 60–70% confluence with pre-designed siRNA targets against DUOX1 (100 nM each) or nON-TARGET (NS) siRNA (Ambion; 200 nM) using DharmaFECT® transfection reagent (Dharmacon) and used for experimentation after 72 hrs (22 (link)). For in vivo siRNA silencing of DUOX1, two DUOX1 siRNA targets in sterile PBS (35 µg/target sequence/mouse) or NS-siRNA (70 µg/mouse) were instilled oropharyngeally in mice under brief isofluorane anesthesia (22 (link)), 48 hrs prior to allergen challenge.
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2

Transfecting Breast Cancer Cells

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MDA-MB-468 cells were transfected with Pin1 or control siRNA (Table S3) using Lipofectamine RNAimax reagent (ThermoFisher Scientific) in Opti-MEM serum-free medium (ThermoFisher Scientific). MCF7 cells were transfected with control (Non-Targeting siRNA Pool #1, Dharmacon; see Key Resources Table) or ESRP1 siRNA (ON-TARGETplus, Dharmacon; see Key Resources Table) using DharmaFECT 4 Transfection Reagent (Dharmacon). All analyses were performed 72 hours after transfection.
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3

Gene Silencing in Primary PAECs

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Primary PAECs were transfected with gene-specific siRNA pools targeting BMPR2, JNK1, CAV1 or SMAD9 at a final concentration of 10 nM using DharmaFECT-1 (Dharmacon; Lafayette, CO, USA) in Opti-MEM (Invitrogen; Grand Island, NY, USA) for 6 h followed by growth in EGM™-2 for 48 h. Non-targeting siRNA Pool-1 (siGENOME, Dharmacon, Lafayette, CO, USA) was used as a control.
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4

Silencing p65 in Human Cells

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Pooled siRNAs designed to specifically target human p65 were purchased from Dharmacon (Lafayette, CO, USA). Cells were transfected with 5 nM ON-TARGETplus SMARTpool siRNA using DharmaFECT 1 transfection reagent (T-2005-01, Dharmacon) according to the manufacturer’s protocol. Non-Targeting siRNA Pool 1 (D-001206-13, Dharmacon) was used as a negative control. Cells were transfected with siRNAs 24 h prior to performing indicated treatments.
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5

Investigating IL1F10 siRNA Effects on B Cells

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Isolated B cells were incubated with 1 µM Accell SMARTpool Human IL1F10 siRNA (Dharmacon, Lafayette, CO, USA) in Accell siRNA Delivery Media (Dharmacon, Lafayette, CO, USA) containing 100 U/mL penicillin, 100 mg/mL streptomycin, and 50 µg/mL transferrin and bovine Insulin (1:2000). The cells were plated in 200 µL in 96-well U-bottom plates. After 24 h, 20 µL FCS was were added to each well. B cells were cultured for a total of 10 days as mentioned above. On days 0, 4, 7, and 10, supernatants were taken for further analysis, and cells were collected for FACS as well as for qPCR. On days 4 and 7, the cells were washed with PBS and plated in an IMDM medium. As a non-targeting control, Non-Targeting siRNA Pool #1 (Dharmacon, Lafayette, CO, USA) was used at 1 µM.
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6

Silencing Pin1 and ESRP1 in Cancer Cells

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MDA-MB-468 cells were transfected with Pin1 or control siRNA (Table S3) using Lipofectamine RNAimax reagent (ThermoFisher Scientific) in Opti-MEM serum-free medium (ThermoFisher Scientific). MCF7 cells were transfected with control (Non-Targeting siRNA Pool #1, Dharmacon; see Key Resources Table) or ESRP1 siRNA (ON-TARGETplus, Dharmacon; see Key Resources Table) using DharmaFECT 4 Transfection Reagent (Dharmacon). All analyses were performed 72 hr after transfection.
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