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51 protocols using caspase 1

1

Histological Analysis of GSVs

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The GSVs from CABG patients and varicose veins were fixed in 10% formalin for at least 24 h. Specimens were dehydrated, embedded with paraffin and sectioned (Tissue-Tek and IVS-410, Sakura Company, Japan) for further investigations. Hematoxylin-Eosin (HE), Masson trichrome and elastic fiber staining for morphologic analysis were carried out for both GSVs from CABG patients and varicose veins. We measured the thickness at 4 points around the vessel circumference, including 12-o’clock, 3-o’clock, 6-o’clock and 9-o’clock. Then, the histopathological analysis was carried out under an optical microscope (DM4000 B, Leica, German) with Image J software (Version 1.48). The person who performed the histopathological examination was blinded to whether the specimens were GSVs from CABG patients or varicose veins. The immunohistochemistry staining for ASC, Caspase-1 and NLRP3 (NOD-like receptor family, pyrin domain-containing 3) was carried out with antibodies for human ASC (1:200, Proteintech, IL, United States), Caspase-1 (1:200, Proteintech, IL, United States) and NLRP3 (1:100, Abcam, Cambridge, United Kingdom) using EnVison method. Brown or brown-black particles in the cytoplasm were considered as positive expressions.
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2

NLRP3 Inflammasome Protein Expression

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Total proteins were extracted from heart tissues or endothelial cells using protein extraction reagents. Protein concentrations were quantified, and equal amounts of proteins (60 μg) were separated by 12% SDS-PAGE gel and electro-transferred to nitrocellulose membranes. After blocking with 5% skimmed milk for 2 h, membranes were incubated with the following primary antibodies at 4 °C overnight: NLRP3 (Proteintech, Chicago, USA, 1:1000, Cat. No.: 19771-1-AP), caspase-1 (Proteintech, Chicago, USA, 1:1000, Cat. No.: 22915-1-AP), GSDMD (Santa Cruz, USA, 1:500, Cat. No.: A2315), IL-1β (ABclonal, Boston, USA, 1:1000, Cat. No.: A1112), IL-18 (ABclonal, Boston, USA, 1:1000, Cat. No.: A1115), Transferrin (BIOSS, Beijing, China, 1:1000, Cat. No: bs-2052R), or GAPDH (Proteintech, Chicago, USA, 1:2000, Cat. No: 60004-1-lg). After washing with TBST, membranes were incubated with HRP-conjugated secondary antibody (1:10,000) for 2 h. Western blot bands were analyzed with the ChemiDicTM XRS+ Imaging System (Bio-Rad Laboratories, Hercules, CA, USA), and the band densities were quantified with Multi Gauge Software of Science Lab 2006 (FUJIFILM Corporation, Tokyo, Japan).
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3

Protein Expression Analysis of Colon Tissues

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The colon tissues were homogenized with the ice−cold RIPA buffer containing protease inhibitors (Beyotime Biotechnology, Shanghai, China). The colon proteins were collected after centrifugation at 14,000× g for 5 min and determined using BCA protein assay kit (Beyotime Biotechnology, Shanghai, China). Equal amounts of protein were separated by 4–12% SDS−PAGE gel and transferred to polyvinylidene difluoride membranes (Millipore, Bedford, MA, USA). After blocking at room temperature with a commercial blocking buffer (Beyotime Biotechnology, Shanghai, China), membranes were incubated overnight at 4 °C with the following primary antibodies: Caspase 3, B cell lymphoma2 (Bcl2), Bcl2 associated X (Bax), cleaved Caspase 3 P17, cleaved Caspase 1 P20, and cleaved IL−1β, which were purchased from Affinity Biosciences (Cincinnati, OH, USA); Occludin, Claudin 1, ZO−1, ACS, NLPR3, Caspase 1, IL−1β, GSDMD, and β−actin, which were purchased from Proteintech (Wuhan, Hubei, China). Then, membranes were incubated with HRP−conjugated secondary antibody for 2–2.5 h at room temperature. Finally, the protein bands were visualized using an enhanced chemiluminescence (ECL) kit (Thermo Scientific, Wilmington, DE, USA) and detected by the ChemiDoc™ imaging system (BIO−RAD, Hercules, CA, USA). The results were quantified using Image J software and normalized to β−actin.
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4

Immunoblot Analysis of Colon Crypts

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For immunoblot analysis, isolated colon crypts or YAMC cells scraped off from the dish were lysed with NP40 lysis buffer (50 mmol/L Tris-HCl, 150 mmol/L NaCl, 1% NP40, pH 8.0) supplied with protease inhibitor cocktail (Roche, USA) on ice for 20 min before 5 min 6000 rpm centrifugation at 4°C. Supernatants were collected for SDS-PAGE analysis. The primary antibodies were incubated overnight at 4°C.
Antibodies: GR/NR3C1 (Cell Signaling Technology, Cat.3660, 1:1000), REV-ERBα /NR1D1(Abcam, Cat. ab174309, 1:1000), NLRP3(Cell Signaling Technology, Cat.15101, 1:1000), IL1β(Abclonal, Cat.A16288, 1:1000), IL6 (Cell Signaling Technology, Cat.12912, 1:1000), CLDN1 (Thermo Fisher, Cat.37-4900, 1:10000), ORMDL3 (Abclonal, Cat.A14951, 1:2000), NPAS2 (Abclonal, Cat.A16930, 1:2000), PARD3 (Proteintech, Cat.11085-1-AP, 1:500), ACTB/β-actin (Abclonal, Cat.AC026, 1:10000), BMAL1 (Proteintech, Cat.14268-1-AP, 1:5000), CLOCK (Abclonal, Cat.A7265, 1:10000), Caspase-1 (Proteintech, Cat.22915-1-AP, 1:1000), IFIT3 (Abclonal, Cat.A3924, 1:1500), CDH1 (Abclonal, Cat.A11492, 1:1500), CDH3 (Abclonal, Cat.A14235, 1:1500).
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5

Western Blot Analysis of Pyroptosis Markers

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Protein extracts were obtained from cells and rat duodenal tissue samples employing total lysis buffer (Beyotime, Shanghai, China) supplemented with protease and phosphatase inhibitors (Fudebio, Hangzhou, China). After homogenization and centrifugation at 14,000 rpm for 15 min at 4 °C, concentration of protein supernatant was measured using a standard Bradford assay (ThermoFisher Scientific, Rockford, USA). The samples were resolved using SDS-PAGE, then transferred onto PVDF membranes (EMD Millipore, Billerica, Massachusetts, USA), and blocked with 5% skim milk for 120 min. The blocked membranes were incubated at 4 °C overnight with corresponding primary antibodies targeting GSDMD full length and cleaved GSDMD (C Teminal) (Abcam, USA), Caspase-1 (Proteintech, Wuhan, China), IL-1β (Abcam, USA), β-Tublin (Abmart, Shanghai, China), Cleaved Caspase-1 (CST, USA)) followed by secondary antibodies (Proteintech, Wuhan, China) at room temperature for 120 min. Lastly, the detection was performed using the enhanced chemiluminescence detection kit (Yeasen, Shanghai, China).
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6

Antioxidant and Anti-inflammatory Effects of LHD

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LPS (a surface glycolipid produced by Gram-negative bacteria) was purchased from Sigma-Aldrich (St. Louis, MO), and stock solutions of 1 mg/mL were prepared and stored at −20°C. Ethyl 2-succinate-anthraquinone (Luhui derivative, LHD) is a novel compound monomer formed by covalent binding of monomethyl succinate to the anthraquinone mother nucleus of aloe-emodin using chemical synthesis techniques in our laboratory. Kits of MDA and SOD were purchased from the Nanjing Jian Cheng Bioengineering Institute. IL-6, IL-1β, and IL-18 ELISA kits were purchased from the Neobioscience Institute (Shenzhen, China) and Elabscience Institute (Wuhan, China). The antibodies used in this study with their working dilutions are indicated in parentheses: NLRP3 (1:500) was purchased from the Wanle Institute, IL-1β (1:500) was purchased from the Elabscience Institute, and caspase-1 (1:500) and ASC (1:500) were purchased from Proteintech Group, Inc. (Wuhan, China).
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7

Molecular Mechanisms of PDGF-Induced ER Stress

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Recombinant human PDGF was purchased from PeproTech (100-14B, United States). pPERK, ATF6, IRE1α, GRP78, PDI, VPS34, Beclin1, ATG5, LC3II, GAPDH and secondary antibodies were obtained from Abcam (Abcam, United States), PDI was purchased from Cell Signaling Technology (Danvers, MA, United States), NLRP3, Pro-Caspase1, Caspase1, GSDMD, GSDMDP30, IL-1 were obtained from Proteintech (Proteintech, China). Goat anti-rabbit and anti-mouse IgG-HRP were purchased from Cell Signaling Technology (Danvers, MA, United States). An enhanced chemiluminescence (ECL) kit was purchased from Bio-Rad (Hercules, CA, United States). H&E kit was purchased from Beyotime.
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8

Immunofluorescence Imaging of Kidney Inflammation

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After dehydration with 30% sucrose and embedding with optimal cutting temperature compound (OCT), the kidney tissue was sliced by a freezing microtome with a thickness of 7 μm. Next, kidney sections were incubated with rabbit or mouse antibodies against CD68 (1 : 200, lot: ab955, Abcam), NLRP3 (1 : 100, lot: F1716, Eterlife, UK), caspase-1 (1 : 200, lot: 00046167, Proteintech, USA), and IL-1β (1 : 200, lot: NB60-633, Novus, USA). Then, the sections were successively incubated with fluorescently labeled secondary antibodies and 4,6-diamidino-2-phenylindole (DAPI). Finally, the sections were observed by using fluorescence microscopy.
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9

Molecular Analysis of Penile Inflammation

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The center portions of the rat penile shafts were severed and fixed in 4% paraformaldehyde. The samples were embedded and cut into 4-μm sections before mounting on glass slides. The penile tissue sections were incubated with primary antibodies to IL-18 (Affinity Bioscience; 1:800), NLRP3 (Affinity Bioscience; 1:1000), caspase-1 (Proteintech; 1:1000), GSDMD (Proteintech; 1:1000), and eNOS (Proteintech; 1:1000) overnight at 4 °C, while the control sections were incubated without the primary antibodies. Next, the sections were incubated with the goat anti-rabbit secondary antibodies at a 1:200 dilution for 2 hours at room temperature. Quantitative image analysis used computational densitometry using the ImageJ application (National Institutes of Health) and a microscope. The levels of marker expression in each were then normalized as a ratio to control. Ten sections of rat penile tissue were counted, and 6 fields were computed from each section.
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10

Inflammasome Pathway Protein Detection

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HDAC6 (Cell Signaling Technology Cat# 7612, RRID:AB_10889735; 1:1000 in WB, 1:100 in IHC), NLRP3 (Cell Signaling Technology Cat# 13158, RRID:AB_2798134; 1:1000 in WB), NLRP3 (AdipoGen Cat# AG-20B-0014, RRID:AB_2490202; 1:1000 in WB), Caspase-1 (Proteintech Cat# 22915-1-AP, RRID:AB_2876874; 1:3000 in WB), Caspase-1 (AdipoGen Cat# AG-20B-0042, RRID:AB_2490248; 1: 1000 in WB), Cleaved N-terminal GSDMD (Abcam Cat# ab215203, RRID not available; 1:500 in WB), ASC (Santa Cruz Biotechnology Cat# sc-514414, RRID:AB_2737351; 1:500 in WB), α-Tubulin (Proteintech Cat# 11224-1-AP, RRID:AB_2210206; 1:5000 in WB), β-Tubulin (Proteintech Cat# 10068-1-AP, RRID:AB_2303998; 1:5000 in WB), acetylated α-Tubulin (Lys40) (Proteintech Cat# 66200-1-Ig, RRID:AB_2722562; 1:1000 in WB), α-SMA (Proteintech Cat# 14395-1-AP, RRID:AB_2223009; 1:2000 in WB, 1:300 in IHC), Col1a (Cell Signaling Technology Cat# 72026, RRID:AB_2904565; 1:2000 in WB, 1:300 in IHC), Goat anti-mouse IgG (H + L), HRP conjugate (SA00001-1, Proteintech), Goat anti-rabbit IgG (H + L), HRP conjugate (SA00001-2, Proteintech), Donkey anti-rabbit IgG (H + L), Alexa Fluor 488 (A-21206, ThermoFisher), Donkey anti-mouse IgG (H + L), Alexa Fluor Plus 555 (A32773, ThermoFisher).
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