The largest database of trusted experimental protocols

6 protocols using sc 365900

1

Immune Cell Profiling and Targeting

Check if the same lab product or an alternative is used in the 5 most similar protocols
The following antibodies and reagents were used: anti-GAPDH (sc-365062, Santa Cruz Biotechnology) for immunoblot; anti-FOXA1 (Abcam, ab23738) for immunoblot and ChIP; anti-HIF1A (Abcam, ab2185) for immunoblot and ChIP; anti-CA IX (H-11) (sc-365900, Santa Cruz Biotechnology) for IHC; anti-PE/Cy7-CD163 (#326513, Biolegend) and anti-APC-CD206 (#321109, Biolegend) for flow cytometry; CCL2 neutralizing antibody (#551226, BD Biosciences, USA); Cobalt(II) chloride hexahydrate (Sigma, C8661); KC7F2 (Selleck Chemicals).
+ Open protocol
+ Expand
2

Immunohistochemistry of PDX Tissue Sections

Check if the same lab product or an alternative is used in the 5 most similar protocols
IHC was performed on paraffin-embedded LuCaP PDX tissue sections [52 (link)]. After deparaffinization, rehydration, and antigen retrieval with citrate buffer, slides were permeabilized with 0.5% Triton X-100. Slides were then blocked using a Ready-to-use IHC kit (K405–50, BioVision, San Francisco) as described by the manufacturer. Slides were then incubated with primary antibody: anti-FOXA1 (1:200; ab23738, Abcam or anti- anti-CA IX (1:500; sc-365900, Santa Cruz) overnight at 4°C. Slides were then washed with 1× tris-buffered saline (TBS) three times for five minutes each time. For secondary antibody, slides were incubated with IBSC-one-step HRP-anti-mouse, rat, and rabbit polymer provided in the kit. Slides were washed again with TBS (3 times for five minutes each time) then incubated with 3,3′-Diaminobenzidine (DAB) substrate for 1 to 2 min at room temperature. Slides were then counterstained with hematoxylin for 15 seconds, washed with running tap water, dehydrated in ethanol, cleared with xylene, and mounted with permount.
+ Open protocol
+ Expand
3

Hypoxic Microenvironment in Pancreatic Cancer

Check if the same lab product or an alternative is used in the 5 most similar protocols
Hypoxic microenvironment status, represented by CA-9, was compared between UFS and NAT groups to evaluate the alterations in physiological tumor conditions after NAT in pancreatic cancer.
Immunohistochemistry was performed on 10% formalin neutral buffer solution-fixed, paraffin-embedded tissue sections by Ventana autostainer model Discover XT (Ventana Medical System. A polyclonal goat antibody against human CA-9 antibody (1:300, sc-365900; Santa Cruz Biotechnology, Inc.) was used. In brief, tissue sections were incubated in citrate buffer for 4 min at 72°C to retrieve antigenicity, followed by incubation with the primary antibody. The bound primary antibody was incubated with the anti-goat secondary antibody at 37°C for 8 min and visualized using ultraView Universal DAB Detection Kit (760–500; Roche Diagnostics). The CA-9 sections were scanned using the NanoZoomer 2.0 system (Fig. 1F). The tumor regions without necrosis were encircled to evaluate the hypoxic tumor microenvironment status (Fig. 1G) and quantified using morphometric analysis from a color-detecting algorithm. CA-9 positivity was calculated as the percentage of CA-9-positive pixels out of the entire pixel count using morphometric analysis with the positive pixel count algorithm (Aperio ImageScope, version 12.4; Leica Biosystems) (Fig. 1H) (17 ).
+ Open protocol
+ Expand
4

Protein Extraction and Immunoblotting for CAIII and CAIX

Check if the same lab product or an alternative is used in the 5 most similar protocols
Tumor and adipose tissue lysates were obtained as previously detailed [16 (link), 17 (link)]. Tissue/cell proteins were extracted in RIPA buffer (20 mM Tris, pH 7.4, 150 mM NaCl, 0.5% Triton-100, 1 mM Na3VO4, 1 mM PMSF). Thirty micrograms of proteins were separated by reducing SDS-PAGE stain-free precast gels® (Bio-Rad) and transferred to polyvinylidene difluoride (PVDF) membranes (Trans-Blot® TurboTM, Bio-Rad). Membranes were probed with the following primary antibodies: CAIII (1:500, sc-373729, Santa Cruz Biotechnology, Santa Cruz, CA) and CAIX (1:500 sc-365900, Santa Cruz Biotechnology, Santa Cruz, CA). Each membrane was incubated overnight at 4 °C with primary antibodies followed by peroxidase-conjugated secondary IgGs (1:3000). Image acquisition and analysis were performed with Image Lab software version 6.0 on a ChemiDoc TM Touch instrument (Bio-Rad), using fluorescence emission of protein bands separated on stain-free gels for the total lane normalization [18 (link)].
+ Open protocol
+ Expand
5

Antibody Staining for Tissue Analysis

Check if the same lab product or an alternative is used in the 5 most similar protocols
The following primary antibodies were used: F4/80 (Abcam, ab16911, Berlin, Germany), CD34 (Abcam, ab8158, Berlin, Germany), NG2 (Merck Millipore, AB5320, Darmstadt), and CAIX (Santa Cruz, sc-365900, Heidelberg, Germany).
For DAB staining, biotinylated secondary antibodies from Vector Laboratories (Eching, Germany) were used (anti-rat IgG BA-9400). For fluorescence staining, secondary antibodies from Jackson ImmunoResearch (Cambridge, UK) were used (Cy3-conjugated AffiniPure goat anti-rat (112-165-003) and Cy5-conjugated AffiniPure goat anti-rabbit IgG 1(11-175-144) from Thermo Fisher Scientific (alexa fluor® plus 555 anti mouse (A32727)).
+ Open protocol
+ Expand
6

Western Blot Analysis of Hypoxia Markers

Check if the same lab product or an alternative is used in the 5 most similar protocols
Cells from the extracellular lactate experiments were lysed in RIPA buffer containing 5% protease inhibitors and 1% phosphatase inhibitors, and the protein concentration was quantified as indicated above. The samples were then denatured in Laemmli buffer, resolved on SDS-polyacrylamide gels and transferred to 0.45 μm pore size nitrocellulose membranes (10600007, Cytiva). The membranes were then blocked and the human cell lines were probed with antibodies against HIF1α (610959, BD Transduction Laboratories), CAIX (sc-365900, Santa Cruz Biotechnology), GAPDH (ab9485, abcam), GOT1 (14886-1-AP, Proteintech), GOT2 (HPA018139, Sigma-Aldrich), HSP60 (ab82520, abcam) and β-actin (A3854, Sigma-Aldrich), while the mouse cells were probed with antibodies against HIF1α (10006421, Cayman Chemical), PDK1 (ADI-KAP-PK112-F, Enzo Life Sciences, Inc.) and HSP60 (sc-1722, Santa Cruz Biotechnology). Antibody binding was detected with the Clarity Western ECL Substrate (1705061, Bio-Rad) or Super-Signal West Femto Maximum Sensitivity Substrate (34096, Thermo Fisher Scientific), and visualized on a digital luminescent image analyzer (Image Quant LAS4000 Mini, GE Healthcare).
+ Open protocol
+ Expand

About PubCompare

Our mission is to provide scientists with the largest repository of trustworthy protocols and intelligent analytical tools, thereby offering them extensive information to design robust protocols aimed at minimizing the risk of failures.

We believe that the most crucial aspect is to grant scientists access to a wide range of reliable sources and new useful tools that surpass human capabilities.

However, we trust in allowing scientists to determine how to construct their own protocols based on this information, as they are the experts in their field.

Ready to get started?

Sign up for free.
Registration takes 20 seconds.
Available from any computer
No download required

Sign up now

Revolutionizing how scientists
search and build protocols!