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8 protocols using easyscript first strand cdna synthesis kit

1

Quantitative Analysis of miR-195-5p Expression

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Total RNA from cells and tissues were isolated using TRIzol (Invitrogen; Thermo Fisher Scientific, Inc.) according to the manufacturer's protocol. RNA (1 µg) was reverse-transcribed into cDNA using the EasyScript First-strand cDNA Synthesis kit (Beijing Transgen Biotech Co., Ltd., Beijing, China). The analysis of miR-195-5p levels was performed by qPCR analysis according the protocol of the SYBR-Green II kit (Takara Biotechnology Co., Ltd., Dalian, China). cDNA (1 µl), 10 µl SYBR Green mixture, 0.8 µl primers (10 µM) and 8.2 µl ddH2O were mixed. The procedures of PCR were described as follow: 95°C for 30 sec, followed by 40 cycles at 95°C for 5 sec and 60°C for 20 sec. The relative level of miR-195-5p was normalized by U6 small nucleolar RNA, which was used as the housekeeping gene. The gene expression level was calculated using the 2−ΔΔCq method (19 (link)). All analyses were performed in triplicate. The primers were designed using Primer Premier 5 (Premier Biosoft International, Palo Alto, CA, USA. The sequences of the RT primers were as follows: miR-195-5p, 5′-TTCCGATCCAGTGCAGGGTCCGAGGTATTCGCACTGGATACGACTCAGTT-3′; U6, 5′-GTCGTATCCAGTGCAGGGTCCGAGGTATTCGCACTGGATACGACAAAAATATG-3′. The nucleotide primers used for qPCR were as follows: miR-195-5p, forward, 5′-GCGATAGCAGCACAGAAATA-3′; U6, forward 5′-GCGCGTCGTGAAGCGTTC-3′ and universal reverse, 5′-GTGCAGGGTCCGAGGT-3′.
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2

Evaluating KAI-1 and NM23 Expression in Breast Cancer

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The T47D and MCF-7 cell lines at a density of 5× 104cells/ml were cultured into six-well plates followed by incubation at 37°C in CO2 incubator. After 24 hr of incubation, the cells were treated with ZnONPs for another 24 hr. Total RNA isolation from the T47D and MCF-7 cell lines was conducted using the EasyPure® RNA Kit (TransGen Biotech ER101-01, China) according to the manufacturer’s protocol. The cDNA synthesis was done using the EasyScript® First-Strand cDNA Synthesis Kit (TransGen Biotech AE301-02, China) based on the manufacturer’s protocol. The sequence of forward and reverse specific primers for glyceraldehyde-3-phosphate dehydrogenase (GAPDH), KAI-1, and NM23 genes was designed using Primer Express Software version 3.0 (Table 1) and verified using BLAST analysis at NCBI (www.ncbi.nlm.nih.gov/blast). The GAPDH was used as the housekeeping gene for normalization within a given sample. The quantitative real-time polymerase chain reaction was performed in ABI7300 real-time PCR system (Applied Biosystems Company, USA) with SYBR GREEN® (Non-specific DNA-binding factors) based on the manufacturer’s protocol. The relative quantifications of NM23 and KAI-1 mRNA expression levels were compared with the housekeeping gene (GAPDH) using the 2−ΔΔCt method 16 .
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3

Real-Time qPCR Gene Expression Analysis

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Total RNAs were isolated by one-step method using TRIzol reagent according to the instruction. The RNA samples were pretreated with RNase-free DNase, and 1 µg RNA of each sample was reverse-transcribed to synthesize first-strand cDNA using EasyScript First-Strand cDNA Synthesis Kit (TransGen Biotech, China). Then the cDNA templates were amplified by real-time quantitative PCR using Maxima SYBR Green/Fluorescein QPCR Master Mix (MBI, Canada) on an ABI-7300 PCR System (Applied Biosystems, USA). PCR reaction started with 1 cycle of 95°C for 10 min, followed by 40 cycles of three steps as 94°C for 30 s, 58°C for 30 s, and 72°C for 30 s. The fluorescence data were collected at 72°C step. The mRNA expression of the target gene was normalized to the housekeeping glyceraldehyde-3-phosphate dehydrogenase (GAPDH) gene. The mRNA relative expression levels of target gene were represented as 2-ΔΔCt, which were obtained by the software SDS v3.2 of ABI-7300 PCR System. PCR primers were designed using Primer Express Software V3.0 (Applied Biosystems, Thermo Fisher Scientific, Waltham, MA, USA). Sequences of primers were as follows:
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4

Gene Expression Analysis of Cardiac Remodeling

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Total RNA was extracted with TRIZOL reagent (Invitrogen, USA). In accordance with the protocol provided by the manufacturer, cDNA was synthesized with an EasyScript First-Strand cDNA Synthesis Kit (TransGen Biotech, China). Quantitative RT-PCR was performed with Maxima™ SYBR Green qPCR Master Mix (Fermentas, USA) on an ABI7500 real-time PCR system (Applied Biosystems, USA). Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) was used for control of internal gene expression. The primers for GAPDH, L-type calcium channel α1c (Cav1.2), transient outward potassium channel (Kv4.3), MPO, MMP-2, MMP-9 and TIMP-1 are shown in Table 1.

RNA primer sequences

Forward primerReverse primer
GAPDH5′-GCAAGCAGGAGTATGACGAGT-3′5′-GGCTCTAACAGTCCGCCTA-3′
Cav1.25′-AGGACGCTATGGGCTATGAG-3′5′-ACACACCGAGAACCAGATTTAG-3′
Kv4.35′-GACGGACTGAGACCAAACTG-3′5′-GCTATGGAAGGAATGTTCGTG-3′
MPO5′-CCGAGGCTACAATGACTCTG-3′5′-GAATGTGAAGGGCTGGATG-3′
MMP-25′-AAGGCACATCCTACAGCAGC-3′5′-CGAGTTCCCGCCAATAGTA-3′
MMP-95′-TTCGTCTTCCTGGGCAAAG-3′5′-CTTCTTGTCGCTGTCAAAGTTG-3′
TIMP-15′-CTTCACCAAGACCTACGCTG-3′5′-TCTGTCCACAAGCAATGAGTG-3′

GAPDH glyceraldehyde-3-phosphate dehydrogenase, Cav1.2 L-type calcium channel α1c, Kv4.3 transient outward potassium channel, MPO myeloperoxidase, MMP matrix metalloproteinase, TIMP tissue inhibitors of metalloproteinase

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5

Quantitative Analysis of Gene Expression in Cellular RNA

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Total cellular RNA was extracted using TRIzol reagent (Invitrogen, Carlsbad, CA, USA). Total RNA was then reverse transcribed to cDNA using the EasyScript® First-Strand cDNA Synthesis kit (Transgene, Beijing, China). Gene expression analysis was performed by qRT-PCR using a SYBR Premix Ex Taq Kit (Takara, Dalian, China). Relative gene expression was quantified using the comparative threshold cycle (2−ΔΔCt) method. The PCR program was as follows: pre-denaturation at 95 °C for 2 min, 40 cycles of denaturation at 95 °C for 5 s, and annealing and elongation at 60 °C for 30 s. The primers used in the experiment were as follows:
CypB: Forward, AAGTCACCGTCAAGGTGTATTTT; Reverse, TGCTGTTTTTGTAGCCAAATCCT.
CNN1: Forward, AGGTTAAGAACAAGCTGGCCC; Reverse, ATGAAGTTGTTGCCGATGCG.
MYL9: Forward, CTCGCTGGGGAAGAACCCC; Reverse, CGTTGCGAATCACATCCTCG.
MYH11: Forward, AGACACAAGTATCACGGGAGAG; Reverse, TTGCCGAATCGTGAGGAGTT.
E-cadherin: Forward, GTCACTGACACCAACGATAATCCT; Reverse, TTTCAGTGTGGTGATTACGACGTTA.
Snail: Forward, GCCATGTCCGGACCCACACTG; Reverse, GGCAGGGGCAGGTATGGAGA.
TWIST: Forward, GTCCGCAGTCTTACGAGGAG; Reverse, GCTTGAGGGTCTGAATCTTGCT.
Vimentin: Forward, CCTGAACCTGAGGGAAACTAA; Reverse, GCAGAAAGGCACTTGAAAGC.
18s: Forward, AAACGGCTACCACATCCA; Reverse, CACCAGACTTGCCCTCCA.
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6

Total RNA Extraction and cDNA Synthesis

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Total RNA was extracted from HCC cells using TRIzol reagent (Invitrogen, Carlsbad, CA, USA) following the manufacturer's instructions. RNA quality was evaluated using a Nanodrop 2000 (Wilmington, DE, USA). Total RNA (1 µg) was reversely transcribed into complementary DNA (cDNA) using EasyScript® First-Strand cDNA Synthesis kit (Transgene,Beijing, China).
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7

SAMs Harvesting and S. reilianum Detection

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SAMs were harvested from infected NILs at 21 DAS. Total RNA was extracted using the plant Total RNA kit (Tiangen), and first-strand cDNA was synthesized using the Easy Script first-strand cDNA synthesis kit (Transgen). The presence or absence of S. reilianum was assessed with PCR and the S. reilianum-specific primer SRac (sr11345). PCR cycling was as follows: 95°C for 5 min, followed by 35 cycles of 95°C for 30 s, 60°C for 30 s, and 72°C for 30 s, with a final 72°C for 10 min. PCR products were examined in 1% agarose gels, after staining with ethidium bromide.
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8

Exosome RNA extraction and quantification

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Serum-derived exosomes were resuspended in 100μl PBS, quantified using BCA protein assay (Thermo, USA), lysed in Trizol reagent (Invitrogen, USA). Tissues were grinded using a homogenizer in Trizol reagent. Cells were collected, washed and lysed in Trizol reagent. Total RNA was isolated following the manufacturer's instructions.
RNA concentration was detected by BioDrop. Each reverse reaction was performed according to the EasyScript First-Strand cDNA Synthesis kit (Transgen, China).Quantitative PCR was performed using a standard SYBR-Green PCR kit protocol. Exosomes miR-451a and LPIN1 quantification were separately using U6 and GAPDH as internal reference. Primers were listed in the supplementary materials section (for all supplemental material see www.cellphysiolbiochem.com). GAPDH primers were described previously [17] .
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