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6 protocols using anti bag3

1

Co-immunoprecipitation of HSPB8 and BAG3

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Spinal cord tissues from the diabetic rats were homogenized, lysed, and then mixed with 50 μl of protein A sepharose beads. Next, the mixture was incubated on a rotary mixer for 30 min at 4 °C with pre-clearing lysates. HSPB8 antibody (2 μg) (R&D Systems, Minneapolis, MN, USA) or control immunoglobulin M (ProteinTech Group, Chicago, IL, USA) was used for co-immunoprecipitation. The resulting solutions were incubated at 4 °C overnight. The solutions were then centrifuged, and the resulting beads were washed with TBST containing a protease inhibitor for three to four times. Approximately 80 μl of supernatant was obtained after the last centrifugation. The pellet was resuspended with 20 μl SDS sample buffer, and then heated at 95-100 °C for 5 min. Western blot was subsequently performed using anti-BAG3 (ProteinTech Group ,Chicago, IL, USA) and anti-HSPB8 (R&D Systems, Minneapolis, MN, USA) antibodies.
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2

Antibody-Based Protein Detection Protocol

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The following antibodies were used for protein detection: anti-BAG3 (rabbit; 10599-1-AP, Proteintech Group), anti-BECN1 (rabbit, #8676, Cell Signaling), anti-γ-tubulin (mouse; T5326, Sigma Aldrich), anti-filamin (rabbit; generously provided by D. Fürst, Bonn), anti-HA (rabbit, sc-805, Santa Cruz), anti-HSC70 (rabbit, generated against purified HSC70 [47 (link)]), anti-HSPB8 (rabbit, STJ24102, St John's Lab), anti-GST (rabbit, sc-459, Santa Cruz), anti-SQSTM1 (guinea-pig, GP62-C, Progen), anti-RALB (rabbit, STJ28797, St John's Lab), anti-STK38 (mouse, ABIN564919, Abnova), anti-SYNPO2 (rabbit; generated by Dieter Fürst, Bonn) and rabbit IgG (sc-2027, Santa Cruz).
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3

Tau Aggregation Inhibition Assay

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Epoxomicin, MG132, and lactacystin were purchased from Cayman Chemical. SP600125 was purchased from Cell Signaling. Trehalose was purchased from Calbiochem. Bafilomycin A1 was purchased from LC Laboratories. Resazurin and Calcein-AM were purchased from VWR. The polyclonal tau antibody was purchased from Dako. 12E8 (pSer262) was a gift from P. Seubert (Prothena, Inc) and PHF-1 (pSer396/404) was a gift from P. Davies (The Feinstein Institute for Medical Research). The other antibodies used in the study were AT-180 (pThr231, Pierce), anti-LC3B (Cell Signaling), anti-HSPB8 (Cell Signaling), anti-BAG3 (Proteintech), anti-β-actin (Millipore), and anti-α-tubulin (Pierce Biotechnology).
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4

Western Blotting and Protein Stability Assay

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Western blotting was performed as previously described (Xue et al., 2022 (link); Yu et al., 2022 (link)). In brief, cell lysates were isolated on an SDS-PAGE gel and then transferred onto polyvinylidene difluoride membranes(Millipore, Bedford, MA, USA). The membranes were blocked in Tris-buffered saline tween (TBST) containing 5% fat-free milk for 1 h at room temperature, and incubated with the indicated dilutions of primary antibodies (anti-BAG3, 1:500; anti-INTS7, 1:1,000; and anti-tubulin, 1:1,000; all from Proteintech) at 4 °C overnight. The next day, the membranes were washed and treated with horseradish peroxidase (HRP)-conjugated secondary antibodies at room temperature for 1 h. Western blots were developed and visualized using the Enhanced Chemiluminescent Substrate (Thermo Scientific, Waltham, MA, USA). Tubulin was used as a loading control. For protein half-life assay, BMMSCs was incubated with 100 µg/mL cycloheximide (CHX) to block protein synthesis, and proteins were assayed after 0, 4 and 8 h.
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5

Western Blot Analysis of Cellular Proteins

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Cells were lysed with NP40 Buffer (ThermoFisher) supplemented with Halt protease and phosphatase inhibitors (ThermoFisher) for 10 min on ice. Protein extracts were quantified with a micro BCA kit (BioRad) and cell lysate was denatured in Laemmli SDS Buffer (1x, Alfa Aesar) at 95 °C for 5 min. 5–10 μg of protein was loaded into precast gels (4–12% mini-PROTEAN TGX, BioRad), ran for ~1 h at 120V, and then transferred to nitrocellulose blotting membranes (0.45um, GE Healthcare) for 1.5 h at 0.4 A at 4 °C using standard protocols. Blotting membranes were blocked with skim milk powder (5%) in tris buffered saline with Tween® 20 (TBST, 0.05% w/v Tween® 20) for 1 h at room temperature. Primary antibodies were incubated overnight at 4 °C in 5% BSA in TBST. The membranes were then washed 3x with TBST for 10 min. Secondary antibodies were diluted in 5% BSA in TBST and incubated for 1 h at room temperature. The following primary and secondary antibodies were used: anti-BAG3 (1:5000, ProteinTech), anti-Histone H3 (1:10000, Abcam), anti-YAP (1:2000, Cell Signaling), anti-pYAP (1:2000, Cell Signaling), antimouse-HRP (1:5000, Jackson ImmunoResearch), and antirabbit-HRP (1:5000, Jackson ImmunoResearch). The ECL substrate (Pierce West Dura, ThermoFisher) was added and the chemiluminescence was captured using an ImageQuant LAS 4000 detector.
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6

Antibody Characterization Protocol

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Unless stated otherwise, all reagents were obtained from regular commercial sources as mentioned in the methods descriptions. The following antibodies were used: anti-BAG3 (Proteintech Group, 10599-1-AP), anti-FLAG (Sigma-Aldrich, F1804, St. Louis, MO, USA), anti-HSP72 (Enzo Life Sciences, Farmingdale, NY, USA, ADI-SPA-810), HRP anti-mouse IgG (H+L) (Jackson ImmunoResearch Laboratories, West Grove, PA, USA, 715-035-151), Cy3 anti-mouse IgG (H+L) (Jackson ImmunoResearch Laboratories, 715-165-151), HRP anti-rabbit IgG (H+L) (Jackson ImmunoResearch Laboratories, 711-035-152), Alexa Fluor 647 anti-rabbit IgG (H+L) (Jackson ImmunoResearch Laboratories, 711-605-152), anti-rabbit IgG (Sigma-Aldrich, I5006), anti-tubulin (Sigma-Aldrich, T9026), and anti-YES1 (Sigma-Aldrich, HPA026480).
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