The largest database of trusted experimental protocols

149 protocols using control igg

1

Western Blotting of Cellular Proteins

Check if the same lab product or an alternative is used in the 5 most similar protocols
Proteins (30–100 µg) were extracted and analysed by western blotting as described53 (link). Primary antibodies used in this study were: anti-RBM14 (Euromedex, ref. 10196-1-AP), anti-PPARγ (Santa Cruz, ref. sc-7196), anti-TFIIB (Santa Cruz, ref. sc-225), anti-β-actin (Santa Cruz, ref. sc-1616), anti-H3 (Abcam, ref. ab1791) and control IgG (Merck-Millipore, ref. 17–658). Secondary antibodies were anti-rabbit IgG-peroxidase antibody (Sigma, ref. A0545) or anti-goat IgG-peroxidase antibody (Sigma, ref. A5420).
+ Open protocol
+ Expand
2

Isolation and Analysis of T-bet and Runx1 in CD8+ T Cells

Check if the same lab product or an alternative is used in the 5 most similar protocols
CD8 T cells were isolated from LCMV-infected B6 mice on day 7 p.i. using Dynabeads FlowComp mouse CD8 kit. Nuclear lysates were prepared using the Active Motif Nuclear Complex Co-IP Kit (cat: 54001), according to the manufacturer’s protocol and subject to either 20 cycles of sonication on Diagenode Bioruptor (30sec on/30sec off on high) alone, or sonication followed by digestion with the Nuclear Complex Co-IP Kit enzymatic shearing cocktail. Protein concentrations were quantified using Pierce micro BCA kit (cat: 23235). Nuclear lysates were incubated with polyclonal antibodies against T-bet (Santa Cruz, cat: sc-21003x), Runx1 (Thermo Fischer, cat: PA5–19638), or control IgG (EMD Millipore, cat: 12–370) and protein complexes were immunoprecipitated using protein A dynabeads (Thermo Fischer, cat: 10001D) in IP low buffer (Active Motif). Washed beads were washed, resuspended in 5X SDS-PAGE sample buffer, and incubated at 95 degrees for 5 minutes. Proteins were separated by SDS-PAGE and transferred to a PVDF membrane for western blot detection using a monoclonal antibody against T-bet (Santa Cruz, cat: sc-21749x).
+ Open protocol
+ Expand
3

Investigating IGF2BP2-CDK6 mRNA Interaction

Check if the same lab product or an alternative is used in the 5 most similar protocols
The relationship between IGF2BP2 protein and CDK6 mRNA was determined using a Magna RIP RNA-Binding Protein Immunoprecipitation Kit (Merck Millipore, Billerica, USA). The antibodies used for the RIP assay included anti-IGF2BP2 and control IgG (Merck Millipore). The coprecipitated RNAs were used for cDNA synthesis and evaluated by qRT-PCR.
+ Open protocol
+ Expand
4

Ago2-Mediated lncRNA and miRNA Profiling

Check if the same lab product or an alternative is used in the 5 most similar protocols
RIP was performed by using the Magna RIP RNA-Binding Protein Immunoprecipitation Kit (Millipore, Bedford, MA). Briefly, cultured Y79 and WERI-Rb1 cells were collected and resuspended in RIP lysis buffer (Solarbio), and the cell extracts were incubated with RIP buffer containing magnetic beads conjugated with human anti-Ago2 antibody (Millipore) or control IgG (Merck Millipore) at room temperature overnight. Subsequently, the magnetic beads were incubated with proteinase K after washing three times. Total RNA was subsequently isolated from the extracts using TRIzol. The relative enrichments of lncRNA RHPN1-AS1 and miR-3133 were determined by qRT-PCR analysis.
+ Open protocol
+ Expand
5

Quantifying Anti-Infliximab Antibodies

Check if the same lab product or an alternative is used in the 5 most similar protocols
IFX (Remicade) was purchased from MSD Italia S.r.l. (Rome, Italy). The anti-IFX antibody HCA-216 was purchased from Bio-Rad Laboratories (Segrate, Italy). Control IgG was purchased from Merck Life Science S.r.l. (Rom, Italy), and 10 × Dulbecco-PBS was obtained from Euroclone S.p.A. (Pero, Italy). Tween 20 and α-lipoic acid were obtained from Sigma-Aldrich (Milan, Italy). Water was provided in-house by a Milli-Q system (Millipore, Bedford, MA, USA).
Anonymized human serum samples from blood donors were obtained from Mario Negri Biobank ‘Saturne’ Certified ISO 9001:2015, a non-profit service unit aimed at the collection and conservation of human blood samples for scientific research purposes in accordance with the Helsinki Declaration and the Italian legislation (Ministerial Decree of 15 July 1997 and subsequent updates).
+ Open protocol
+ Expand
6

RNA-binding Protein Immunoprecipitation Assay

Check if the same lab product or an alternative is used in the 5 most similar protocols
The RNA-binding protein immunoprecipitation assay was performed using a Magna RIP™ RNA-Binding Protein Immunoprecipitation Kit (Millipore) according to the manufacturer’s instructions. Briefly, 70% confluent mouse articular chondrocytes were infected with Ad-ZFP36L1 and Ad-HSPA1A at the indicated MOIs for 24 h. Cell lysates were immunoprecipitated with anti-ZFP36L1 (3 μg, 101AP; FabGennix International) or control IgG (1 μg, CS200621; EMD Millipore Corp.) antibody. RNA was extracted from immobilized magnetic bead-bound complexes. The immunoprecipitated RNA was reverse transcribed, and the resulting cDNA was PCR-amplified. qRT-PCR reactions were performed using an iCycler thermal cycler (Bio-Rad) and SYBR premixExTaq (TaKaRa Bio). The primers for the RIP assay were designed to amplify three different ARE-containing regions of the Hspa1a 3′-UTR region (Supplementary Table 4). For each target gene, the transcript levels were normalized that of GAPDH and expressed as a fold-change relative to the indicated control.
+ Open protocol
+ Expand
7

Investigating lncRNA-miRNA Interactions

Check if the same lab product or an alternative is used in the 5 most similar protocols
The relationship between lncRNA AC005224.4 and miR-140-3p was determined using a Magna RIP RNA-Binding Protein Immunoprecipitation Kit (Merck Millipore, Billerica, MA, USA). Antibodies used for RIP assay included anti-AGO2 and control IgG (Merck Millipore). The co-precipitated RNAs were used for cDNA synthesis and evaluated by qRT-PCR.
+ Open protocol
+ Expand
8

Chromatin Immunoprecipitation Assay Protocol

Check if the same lab product or an alternative is used in the 5 most similar protocols
Chromatin immunoprecipitation (ChIP) assays were performed as previously described (24 (link), 35 (link)). Chromatin was prepared from RAW 264.7 cells treated with LPS for 4 hours and crosslinked in 1% formaldehyde for 10 minutes. Chromatin was sonicated to an average length of 400–600bp. 5 µg of chromatin was immunoprecipitated with Protein A beads using 0.5µg of antibodies for control IgG (rabbit polyclonal antibody, EMD Millipore, Billerica, MA), NF-κB p65 (clone sc-372, Santa Cruz Biotechnology Inc., Santa Cruz, CA), H3K4me1 (rabbit polyclonal antibody, EMD Millipore, Billerica, MA), H3K4me3 (rabbit polyclonal antibody, EMD Millipore, Billerica, MA), or H3K27ac (rabbit polyclonal antibody, EMD Millipore, Billerica, MA). Immunoprecipitates were then quantitated by quantitative real-time PCR and calculated as a percent of input. Primer sets used in these assays are provided in Supplemental Table S1. All ChIP assays were performed at least three times from independent experiments. The data were averaged and plotted as percent of input chromatin.
+ Open protocol
+ Expand
9

Immunoprecipitation of Polycomb and LSD1

Check if the same lab product or an alternative is used in the 5 most similar protocols
H1299 and H1975 cells were lysed for immunoprecipitation of endogenous polycomb repressive complex2 and LSD1. The supernatants were incubated with protein A/G Sepharose beads coated with antibodies that recognized EZH2, LSD1, SNRNP70 or with control IgG (EMD Millipore, Darmstadt, Germany) for 6 h at 4 °C. After the beads were washed with wash buffer, the complexes were incubated with 0.1% SDS/0.5 mg/ml Proteinase K (30 min at 55 °C) to remove proteins, respectively. The RNA isolated from the immunoprecipitation materials was further assessed by qPCR analysis.
+ Open protocol
+ Expand
10

Investigating EZH2-PCAT6 Interaction

Check if the same lab product or an alternative is used in the 5 most similar protocols
In order to assess the interaction between EZH2 and PCAT6, the EZMagna RIP kit (Millipore, Billerica, MA, USA) was used. A549 cells were lysed and the supernatants were incubated with protein A/G Sepharose beads coated with antibodies that recognized EZH2 or with control IgG (EMD Millipore, Darmstadt, Germany). The antibodies were conjugated at 4 °C for 6 h. We used wash buffer to wash the beads and used 0.1% SDS/0.5 mg/ml Proteinase K to digest the proteins (30 min at 55 °C). Then, the purified RNA from the immunoprecipitation materials was used for further assessed by qPCR analysis.
+ Open protocol
+ Expand

About PubCompare

Our mission is to provide scientists with the largest repository of trustworthy protocols and intelligent analytical tools, thereby offering them extensive information to design robust protocols aimed at minimizing the risk of failures.

We believe that the most crucial aspect is to grant scientists access to a wide range of reliable sources and new useful tools that surpass human capabilities.

However, we trust in allowing scientists to determine how to construct their own protocols based on this information, as they are the experts in their field.

Ready to get started?

Sign up for free.
Registration takes 20 seconds.
Available from any computer
No download required

Sign up now

Revolutionizing how scientists
search and build protocols!