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17 protocols using p nrf2

1

Western Blot Analysis of Cellular Proteins

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The content of Nrf2, SOD, GSTP, NQO1, GSK-3β, Bax, p53, caspase-3, and LC3 in cellular extracts was assessed using the Western blot technique. Cytosolic (Nrf2, SOD, GSTP, NQO1, GSK-3β, P-GSK-3β, Bax, p53, caspase-3, and LC3) or nuclear (Nrf2, P-Nrf2) extracts were separated on 7.5% SDS-PAGE gels (Bio-Rad, USA) and transferred onto the nitrocellulose membrane. After blocking with 10% skimmed milk, the membranes were incubated with primary polyclonal antibodies directed against Nrf2, SOD, GSTP, NQO1, GSK-3β, P-GSK-3β, Bax, p53, caspase-3, and LC3 (Santa Cruz Biotechnology, USA) and P-Nrf2 (Abcam, Cambridge, UK). β-actin or lamin served as a loading control. After washing, the membranes were probed with alkaline phosphatase-labeled secondary antibodies (anti-rabbit IgG, anti-mouse IgG, anti-goat IgG, Santa Cruz Biotechnology, USA) and stained using the BCIP/NBT AP conjugate substrate kit (Bio-Rad, USA). The quantity one software was used to determine the amount of the immunoreactive products and the values were calculated as relative absorbance units (RQ) per mg protein.
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2

Protein Expression Analysis of UCB-MSC Spheroids

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Proteins were collected from 3D spheroids of UCB-MSCs using the radioimmunoprecipitation assay buffer (RIPA), which is a lysis buffer containing protease inhibitors (Thermo Fisher Scientific, Waltham, MA, USA); proteins were then sonicated. Protein samples were separated and transferred onto nitrocellulose membranes. After blocking, the membranes were stained with primary antibodies: PARP, p-ERK, t-ERK, p-AKT and t-AKT (cell signaling, Danvers, MA, USA), BAX, SOD2, E-cadherin, PI3K and p-Nrf2 (Abcam, Cambridge, UK), caspase-3 (Santa Cruz Biotech., Dallas, TX, USA), GAPDH (AbClon, Seoul, Korea), and β-actin (Sigma), respectively. After washing, the membranes were incubated with the HRP-conjugated secondary antibody. Protein bands were visualized using an Amersham™ ECL Plus system (GE Healthcare, Chicago, IL, USA) and imaged using a ChemiDoc XRS camera (Bio-Rad Laboratories, Hercules, CA, USA). Band densities were analyzed via Image Lab software 6.0.1 (BioRad) and calculated by normalization to GAPDH or β-actin.
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3

HuH7 and Hep3B Cell Culture Protocols

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HuH7 and Hep3B cells were obtained from the American Type Culture Collection (Manassas, VA). HuH7 and Hep3B were cultured in Dulbecco’s modified Eagle’s medium with 10% fetal bovine serum, 100 IU/mL penicillin, and 100 μg/mL streptomycin at 37ºC in 10% CO2. Antibodies against phosphorylated NRF2 (P‐NRF2), NRF2, PD‐L1, and HIF1α were purchased from Abcam (Cambridge, United Kingdom). β‐actin antibody was obtained from Sigma‐Aldrich (St. Louis, MO). Stealth RNA interference (RNAi; Thermo Fisher Scientific, Waltham, MA; GE Healthcare Dharmacon, Lafayette, CO) was used to knock down HIF1A.
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4

Immunofluorescent Staining of Nrf2 and PD-L1

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Treated cells were first incubated with 4% paraformaldehyde for 10 minutes at room temperature and then blocked with 5% goat serum for 60 minutes at room temperature. Cells were then incubated with primary antibodies (P‐Nrf2, dilution 1:2,000, Abcam; PD‐L1, dilution 1:1,000, Cell Signaling Technology, Danvers, MA) at 4°C overnight, followed by incubation with Alexa Fluor 597‐conjugated or Alexa Fluor 488‐conjugated secondary antibodies (1:250, Thermo Fisher Scientific) for 1 hour at room temperature. Cells were then stained with diamidino‐phenylindole for 10 minutes at room temperature. After washes, cells were observed using a fluorescence microscope (Biorevo BZ‐9000; Keyence, Osaka, Japan).
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5

Cellular Antioxidant Mechanisms Explored

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EGCG (purity ≥ 98%) was provided by Teaturn Bio-pharmaceutical Co., Ltd. (Wuxi, China). Anti-TFR1, FPN, FTH/L, NRF2, pNRF2, GPX4, P62, and HO-1 were purchased from Abcam; anti-KEAP1, SLC3A2, and SLC7A11 were purchased from Cell Signaling Technology; and β-actin was purchased from Santa Cruz biotechnology.
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6

Western Blot Analysis of ER Stress Markers

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Samples were incubated for 10 minutes at 95°C in the loading buffer. Samples were then subjected to electrophoresis on 10% SDS-PAGE and transferred to PVDF membranes. The membranes were incubated with primary antibodies of Bb (1:500; Quidel catalog A227), GRP78 (1:1,000; Proteintech catalog 11587-1-AP), CHOP (1:500; Proteintech catalog 15204-1-AP), p-Nrf2 (1:500; Abcam catalog ab76026), cleaved caspase-3 (1:1,000; Cell Signaling Technology catalog 9661), NF-κB p65 (1:1,000; Cell Signaling Technology catalog 8242), p-p65 (1:1,000; Cell Signaling Technology catalog 3033), IκBα (1:1,000; Cell Signaling Technology catalog 4814), p-IκBα (1:1,000; Cell Signaling Technology catalog 9246), IKBKB (1:500; Proteintech catalog 15649-1-AP), histone H3 (1:1,000; Proteintech catalog 17168-1-AP), and β-tubulin (1:2,000; Cell Signaling Technology catalog 2128), followed by horseradish peroxidase–conjugated secondary antibodies (Proteintech catalog SA00001-1 and SA00001-2). Proteins were visualized on autoradiographic film using an ECL Plus Western blot detection system (GE Healthcare, now Cytiva).
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7

Eriocitrin Modulates Inflammatory and Oxidative Pathways

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Eriocitrin powder (purity ≥98%) was purchased from Tianjin Shilan Technology Co., (China). It was dissolved in 0.5% carboxymethyl cellulose sodium before use. interleukin-6 (IL-6), tumor necrosis factor-α (TNF-α), and interleukin-10 (IL-10) enzyme-linked immunosorbent assay (ELISA) kits were purchased from R&D system Inc (MN, USA). superoxide dismutase (SOD), malondialdehyde (MDA), and lactic dehydrogenase (LDH) kits were purchased from Solarbio (Beijing, China). All of the antibodies (Caspase-3, Caspase-9, Nrf2, p-Nrf2, NQO-1, HO-1, NF-κB p65, p-p65) used were purchased from Abcam (Cambridge, UK).
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8

Immunohistochemical Analysis of Hepatic Markers

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The formalin-fixed, paraffin-embedded liver tissues were sectioned at 5 μm. Then, the sections were dewaxed in xylene and rehydrated through a graded series of alcohol to water. The liver slices were first treated for 60 min with primary antibodies against Iκ-Bα, NF-κB, Nrf2, p-Nrf2, and HO-1 (obtained from Abcam, Cambridge, UK) and then incubated for 120 min with biotinylated anti-mouse secondary antibodies (obtained from Abcam, Cambridge, England). Finally, the tissue sections were then incubated with streptavidin-horseradish peroxidase (Abcam, Cambridge, UK), and a light microscope was used to measure the brown shade under 3,3’-diaminobenzidine tetrahydrochloride [18 (link)]. Three randomly selected areas were observed per slide, and the mean density was calculated using ImageJ software.
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9

Comprehensive Protein Extraction and Analysis

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Total proteins were extracted using ice-cold RIPA buffer containing protease inhibitor cocktail (Roche). Protein extraction kit (Beyotime) was used to extract nuclear and cytoplasmic protein. The concentrations were determined using a BCA kit (Beyotime). Equal amount of protein from each sample was run in 8–12% Tris-glycine SDS-PAGE gel, followed by transfer to PVDF membrane (Millipore). Membranes were blocked with 5% skim milk and probed with primary antibodies at 4 °C overnight, followed by incubation with horseradish peroxidase-conjugated anti-IgG (Beyotime) for 1 h at room temperature. The intensity of bands was visualized and determined using an enhanced chemiluminescence detection system (Bio-Rad Laboratories). Primary antibodies used were: γ-H2AX, GPX-1, Akt, p-Akt, p21, S6, p-S6, p-LKB1, LC3B, AMPK, p-AMPK, Atg7, p62, ACC, p-ACC (1:1000, Cell Signaling), SOD1, SOD2, Catalase, p-NRF2, FOXO3a, p-FOXO3a (1:1000, Abcam), p16, NRF2, Lamin B1, GCLC, GCLM, HMOX1, NQO1, TXN, Keap1, SIRT1, SIRT3, SIRT6, LKB1, CAMKK2(1:1000, ProteinTech), Actin and GAPDH (1:1000, Beyotime). The primary images (Supplementary Fig. 18) were cropped for presentation.
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10

Comprehensive Protein Analysis via Western Blotting

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Western blotting assays were performed as described previously 21 (link). The primary antibodies included those against phospho-nuclear factor erythroid 2 related factor 2 (p-Nrf2), tumor necrosis factor-alpha (TNF-α), peroxisome proliferator-activated receptor gamma coactivator 1 α (PGC-1α), sirtuin 1 (Sirt1), and fatty acid translocase/cluster of differentiation 36 (CD36), all of which were obtained from Abcam (Cambridge, MA). Total Nrf2 (t-Nrf2), hexokinase II (HK II), and glyceraldehyde 3-phosphate dehydrogenase (GAPDH) were purchased from Santa Cruz Biotechnology (Santa Cruz, CA). AMP-activated protein kinase α (AMPKα), phospho-AMPKα (Thr172), phospho-Akt (Ser473, p-Akt), total Akt (t-Akt), phospho-Akt2 (Ser474, p-Akt2), and total Akt2 (t-Akt2) were all obtained from Cell Signaling Technology (Danvers, MA), and 3-nitrotyrosine (3-NT) was purchased from Millipore (Billerica, MA). Quantitative densitometry was performed on identified bands using Image Quant 5.2 software (GE Healthcare Bio-Sciences AB) 23 (link), 24 (link).
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