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6 protocols using kanamycin

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Antibiotic Susceptibility Profiling

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Antibiotic susceptibility was tested using the Kirby–Bauer disc diffusion method with some modifications [33 (link)]. Susceptibilities to ten different antibiotic discs (ampicillin (10 µg), penicillin G (10 IU), kanamycin (30 µg), gentamicin (10 µg), streptomycin (10 µg), tetracycline (30 µg), erythromycin (15 µg), vancomycin (30 µg), chloramphenicol (30 µg), and methicillin (5 µg) (Liofilchem, Teramo, Italy)) were evaluated. Each bacterial suspension was adjusted to a turbidity of McFarland 0.5 and inoculated to BHI plates. After antibiotic discs were carefully placed on BHI plates, plates were incubated at 37 °C for 24 h. The diameter of a clear zone was measured and interpreted according to the manufacturer’s instructions based on CLSI guidelines.
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Antibiotic Susceptibility of B. coagulans IDCC 1201

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The antibiotic susceptibility of B. coagulans IDCC 1201 was determined based on MIC values. In short, approximately 1–2 × 108 CFU/ml of B. coagulans IDCC 1201 was spread onto each MRS agar plate. Then antibiotic (E-test) strips containing ampicillin, chloramphenicol, clindamycin, erythromycin, gentamicin, kanamycin, streptomycin, tetracycline, and vancomycin (Liofilchem, Waltham, MA, USA) were placed on the agar plates.
Cell growth inhibition was also investigated to confirm the results of the antibiotic susceptibility test. B. coagulans IDCC 1201 at 106 CFU/ml and 1:1 (v/v) to each antibiotic solution at various concentrations were transferred to a 96-well plate and incubated at 37°C for 20 hr. Then, the optical density of each incubation was observed for 20 hr using a microplate reader (BioTek, Winooski, VT, USA). The cutoff values of the MICs were determined according to EFSA's technical guidelines of the EFSA on antibiotic susceptibility (EFSA, 2018 ).
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Antibiotic Resistance Profiling of F. sanfranciscensis

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The antibiotic resistance genes in 14 F. sanfranciscensis strains were analyzed using the CARD database (Comprehensive Antibiotic Resistance Database, http://arpcard.Mcmaster.ca, accessed on 25 December 2023). If the sequence matching degree of the resistance gene reaches 20% (e-value < 1 × 10−5), the antibiotic resistance gene is considered to exist. The Origin 2023 software was used to build a thermal map of the predicted data.
Based on the American Association for Clinical and Laboratory Standards Institute (CLSI) guidelines [34 (link)], the antibiotic resistance of the 14 F. sanfranciscensis strains was tested using the disk diffusion method. The antibiotics per disk were as follows: gentamicin, kanamycin, streptomycin, erythromycin, clindamycin, benzathine, ampicillin, tetracycline, chloramphenicol, and mitomycin-sulfamethoxazole, purchased from Liofilchem. The strains that were classified as susceptible (S, zone diameter > 20), intermediate (IR, 15 < zone diameter < 19), or resistant (R, zone diameter ≤ 14) hinged on the diameter of the zone of inhibition around the disk [30 (link)].
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Antimicrobial Evaluation of Lavender and Plant Extracts

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The in vitro antimicrobial activity tests of methanolic extracts from the SR and RW against three species of fungi (Aspergillus niger, Alternaria alternata, and Penicillium chrysogenum, ATCC 53346, 8741, and 20044) and two species of bacteria (Pseudomonas aeroginosa and Bacillus sp., ATCC 27813 and 15970) were performed using a previously reported method [57 (link)].
Antimicrobial activity assessment of the industrially obtained lavender essential oil samples was performed in vitro on the following microorganisms: Non-pathogenic Gram-positive and Gram-negative strains of Bacillus subtilis NCNM BB-01 (ATCC 33608) and Pseudomonas fluorescens NCNM-PFB-01 (ATCC 25323), phytopathogenic strains of Xanthomonas campestris NCNM BX-01 (ATCC 53196), Erwinia amylovora NCNM BE-01 (ATCC 29780), E. carotovora NCNM BE-03 (ATCC 15713), and fungus strains of Candida utilis NCNM Y-22 (ATCC 44638) and Saccharomyces cerevisiae NCNM Y-20 (ATCC 4117) following a method described elsewhere [58 ].
The compounds Caspofungin and Kanamycin, both from Liofilchem (Roseto degli Abruzzi, Italy), were used as standards for antifungal and antibacterial activity tests.
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Antibiotic Susceptibility Screening of Probiotics

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The antibiotic susceptibilities of three probiotic candidates were assayed using the minimum inhibitory concentration (MIC) test strip method. Nine antibiotic strips were used for testing the bacterial strains, namely, ampicillin, chloramphenicol, clindamycin, erythromycin, gentamicin, kanamycin, streptomycin, tetracycline, and vancomycin (Liofilchem, Abruzzi, Italy). The bacteria were grown for 18 h at 37 °C in MRS medium. The cells were harvested via centrifugation at 3470× g for 5 min, washed twice with PBS (pH 7.0), and resuspended in PBS to a McFarland turbidity of 0.5. The cell suspensions were inoculated on BHI agar using swabs. The plates were dried for 15 min, and the MIC test strips were placed on the agar surface according to the manufacturer’s instructions. The plates were then incubated at 37 °C, and the results were assessed after 20 h of inoculation, according to the European Food Safety Authority (EFSA) guidelines [23 (link)].
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Antibiotic Susceptibility Testing of Lactobacillus

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The determination of bacterial sensitivity to selected antibiotics was performed according to the guidelines of the European Committee on Antimicrobial Susceptibility Testing (EUCAST). The method was slightly modified to adapt to the tested strain.
Bacterial culture of Lpb. plantarum DB2, grown in MRS broth, was separated from the medium by centrifugation at 6440× g for 10 min and resuspended in sterile water, with OD values adjusted to 0.5 ± 0.05. The cell suspension was applied to MRS agar plates by uniformly swabbing a cotton swab, previously immersed in the suspension, in three directions. After inoculation, discs of the tested antibiotics (Liofilchem S.r.l., Roseto degli Abruzzi, Italy) were placed on the inoculated MRS agar. The plates were then incubated at 37 °C, and after 24 h, the appearance of inhibition zones was observed, indicating the sensitivity of the tested strain to the antibiotic.
In this study, the sensitivity of lactic acid bacteria isolate DB2 to the following antibiotics was investigated: ampicillin (10 µg), erythromycin (15 µg), gentamicin (10 µg), kanamycin (30 µg), clindamycin (10 µg), chloramphenicol (10 µg), streptomycin (10 µg), tetracycline (30 µg), and vancomycin (30 µg) (Liofilchem S.r.l., Roseto degli Abruzzi, Italy).
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