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5 protocols using p erk1

1

Cell Culture Protocols for Mouse Skin Epithelia

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JB6 P+ and JB6 P cells (mouse skin epithelial cells) were obtained from the American type Culture Collection (Manassas, VA, USA) and were free from mycoplasma contamination. Cells were grown in MEM (Invitrogen, Carlsbad, CA, USA) supplemented with 5% FBS and antibiotics. NMuMG cells were received as a kind gift from Dr Richard Schwartz (MSU) and were grown in DMEM (Invitrogen) supplemented with 10% FBS and antibiotics. Pharmacological inhibitors against cMyc, mTOR and Erk1 were purchased from EMD Millipore (Billerca, MA, USA). Tivantinib was purchased from APExBIO (Houston, TX, USA). FGFR-1 Ab for immunofluorescence was purchased from Cell Signaling Technology (Danvers, MA, USA). FGF2 Ab was purchased from Santa Cruz Biotechnology (Dallas, TX, USA). Antibodies: p-mTOR (Cell Signaling Technology #2974), mTOR (Cell Signaling Technology #2983), cMyc (Cell Signaling Technology #5605), p-Erk1 (Cell Signaling Technology #4370), Erk1 (Cell Signaling Technology #9102), Actin (Sigma #A5060), HGF (Abcam #ab-83760), FGF2 (Santa Cruz #sc-365106), FGFR-1 (R&D Systems, Minneapolis, MN, USA #MAB765), Anti-Rabbit 2nd Ab (Li-Cor #926-32213), Anti-Mouse 2nd Ab (Li-Cor #926-32212).
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Culturing Mouse Skin Epithelial Cells

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JB6 P+ and JB6 P cells (mouse skin epithelial cells) were obtained from the American type Culture Collection (Manassas, VA) and were free from mycoplasma contamination. Cells were grown in MEM (Invitrogen, Carlsbad, CA) supplemented with 5% FBS and antibiotics. NMuMG cells were received as a kind gift from Dr. Richard Schwartz (MSU) and were grown in DMEM (Invitrogen, Carlsbad, CA) supplemented with 10% FBS and antibiotics. Pharmacological inhibitors against cMyc, mTOR and Erk1 were purchased from EMD Millipore, USA. Tivantinib was purchased from APExBIO (Houston, TX). FGFR-1 Ab for immunofluorescence was purchased from Cell Signaling Technology (Danvers, MA). FGF2 Ab was purchased from Santa Cruz Biotechnology (Dallas, TX). Antibodies: p-mTOR (Cell Signaling Technology #2974), mTOR (Cell Signaling Technology #2983), c-Myc (Cell Signaling Technology #5605), p-Erk1 (Cell Signaling Technology #4370), Erk1 (Cell Signaling Technology #9102), Actin (Sigma #A5060), HGF (Abcam #ab-83760), FGF2 (Santa Cruz #sc-365106), FGFR1 (R&D Systems #MAB765), Anti-Rabbit 2nd Ab (Li-Cor #926–32213), Anti-Mouse 2nd Ab (Li-Cor #926–32212).
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Western Blot Analysis of Signaling Pathways

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Western blot analysis was carried out by the following antibodies specific for: AKT, p-AKT (Ser473), ERK 1/2, p-ERK1/2 (Thr202/Tyr204), S6, p-S6 (Ser235/236), PTEN and Bax (Cell Signaling); MDM4 (Bethyl Laboratories), MDM2 (Santa Cruz), β-actin (Sigma-Aldrich), α-tubulin (Calbiochem) and Vinculin (Sigma-Aldrich). SDS-PAGE was performed using 30 μg of protein samples on 4%–12% NuPAGE Bis-Tris polyacrylamide gels (Invitrogen Life Technologies), as described [18 (link), 37 (link)–38 (link)]. Development was performed by the chemiluminescence method with the ECL Western Blotting Detection System (GE Healthcare) or Luminata Crescendo (Millipore). Basal/constitutive phosphoprotein characterization was carried out after O/N culture without FCS. Modulation of expression of phosphoproteins, by inhibitors, was assessed in melanoma cells treated either for 4 hr or O/N with MAPK and PI3K/mTOR pathways inhibitors, alone or in combinations, with 2% FCS. Protein quantification was performed by densitometric analysis with the Quantity One software (BioRad Laboratories).
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4

Multimodal Histological Analysis of Tissue Samples

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H&E staining, immunohistochemistry, and alcian blue staining were performed from paraffin-embedded tissue samples; 1–2 µm slides were cut by microtome (Leica). All antibodies for immunohistochemical staining were used in 1:50, 1:100, or 1:200 dilution, and incubated overnight at 4 °C. Primary antibodies: DNA polymerase theta (Abcam ab111218, Cambridge, UK), PARP1 (Abcam ab32138, Cambridge, UK), Mre11 (Cell Signaling 4895, Danvers, MA, USA), Ku70 (Santa Cruz Biotechnology sc-1486, Heidelberg, Germany), Ki67 (Bethyl Laboratories IHC-00375, Montgomery, TX, USA), PCNA (Cell Signaling 2586, Danvers, MA, USA), CyclinD1 (Cell Signaling 2978, Danvers, MA, USA), p-ERK1 (Cell Signaling 4370, Danvers, MA, USA), Cox2 (Cell Signaling 12282, Danvers, MA, USA). Alcian blue was performed by Alcian Blue pH 2.5 Stain Kit (Vector Laboratories H-3501, Newark, CA, USA), according to the manufacturer’s protocol. All slides used for histological analysis were scanned with the Pannoramic Midi II (3DHISTECH, Budapest, Hungary), and evaluated with different magnification using Quant Center software (3DHISTECH, Budapest, Hungary).
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5

PDGF-BB Stimulates Rat PASMC Signaling

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For the western blot analysis rat PASMCs were isolated from rat pulmonary arteries and seeded in 3.5 cm dishes until they reached a nearly confluent growth state. PASMCs were starved for 24 hours (0.1% BSA) and afterwards stimulated with PDGF-BB (10 ng/ml) in the absence or presence of NS1619 (100 µmol/l; 120 minutes preincubation, Sigma-Aldrich, Germany). After four and eight minutes, respectively, the cells were frozen in liquid nitrogen and subsequently scraped in triton-X-100 lysis buffer. Protein concentration was determined by Bradford assay. Extracted protein samples were boiled in a Laemmli buffer and 50 µg of each sample was separated by sodium dodecyl sulfate–polyacrylamide gel electrophoresis (SDS–PAGE; 10%) and transferred onto nitrocellulose membrane as described previously [8] (link). Proteins were detected using primary antibodies against p-ERK1, p-ERK2, ERK1, ERK2 and p-AKT (Cell Signaling, Danvers, USA;1∶1.000 each antibody) and appropriate secondary antibodies labeled with infrared dyes and visualized using the Odyssey infrared imaging system (Li-COR Biosciences, Bad Homburg, Germany). Densitometry was carried out using the integrated Odyssey software.
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