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20 protocols using katoiii

1

Gastric Cancer Cell Line Analysis

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Nine gastric cancer cell lines, including SNU-16, MKN-1, MKN-45, SNU-5, KATO-III, HGC-27, NUGC-4, SH-10 and H-111, were analyzed. SNU-16 and SNU-5 cell lines were obtained from the Korean Research Institute of Bioscience and Biotechnology (Taejon, South Korea). MKN-1, MKN-45, KATO-III, HGC-27, NUGC-4, SH-10 and H-111 cell lines were obtained from the RIKEN BioResource Center (Tsukuba, Japan). The culture conditions were described previously (17 (link)).
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2

Cell Line Procurement for Diverse Cancer Research

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The human PDAC cell lines PANC-1 (RCB2095) and MIA PaCa-2 (RCB2094), human bile duct cell line HuCCT1 (RCB1960), human hepatocellular carcinoma cell line HuH-7 (RCB1942), human liver cancer cell line Hep G2 (RCB1886), and human gastric cancer cell line KATO III (RCB2088) were purchased from RIKEN BRC. The colon cancer cell line SW480 (ATCC CCL-228) was purchased from ATCC.
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3

Culturing Gastric Cancer Cell Lines

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The GC cell lines MKN7, MKN74, MKN45, and KATO III were obtained from the Riken BioResource Center (Tsukuba, Japan) in 2011. These cell lines were not tested or authenticated after they were obtained. All cell lines were maintained in RPMI‐1640 (Wako Pure Chemical Industries, Osaka, Japan) containing 10% inactivated FBS (EuroClone, Milano, Italy) with 100 U/mL penicillin and 100 μg/mL streptomycin (Nacalai Tesque, Kyoto, Japan) and cultured in a humidified 5% CO2 incubator at 37°C.
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4

Characterizing Gastric Cancer Cell Lines

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The gastric cancer cell lines MKN74, Kato-III, SH-10-TC (Riken Bioresource Center, Tsukuba, Japan), AGS (ATCC), SNU216, SNU484, SNU601, SNU638, SNU668, and SNU719 (Korean Cell Line Bank, Seoul, Korea) were cultured in RPMI1640 or DMEM supplemented with 10% FBS. All cell lines were authenticated by an isoenzyme analysis or short tandem repeat analysis and initially expanded and cryopreserved within one month of receipt. Cells were used within three months after thawing frozen vials. The construction of WT-ER FOXO3- and Act-ER FOXO3-expressing cells is indicated in Supplementary Information.
For the colony formation assay, 2 × 103 cells were cultured in a 6-well plate in the presence or absence of tamoxifen (Sigma-Aldrich) at 1 μM for 10 days. Cells were then stained with Giemsa solution, and the colony numbers per well were counted. For the cell proliferation analysis, 1 × 103 cells were seeded in a 96-well plate, and the cell viability was examined with a Cell Titer-Glo Cell Viability Assay (Promega, Madison, WI). The luciferase activity was measured by a Centros XS3 LB960 (Berthold Technologies, Bad Wildbad, Germany). All cell culture experiments were repeated three times. Mycoplasma testing was performed using a direct immunofluorescence test.
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5

Culturing Human Gastric Carcinoma Cell Lines

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The human GC cell lines HGC-27, Kato III, and MKN45 were purchased from RIKEN BioResource Center, Tokyo, Japan. These cell lines were maintained in RPMI medium (Nacalai Tesque, Kyoto, Japan) supplemented with 10% fetal bovine serum, 100 U/ml of penicillin and 100 μg/ml of streptomycin. The flasks were kept in a humidified incubator at 37°C with 5.0% CO2 in air. Quin, a potassium channel blocker, was purchased from Nacalai Tesque.
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6

Cell line cultivation protocol

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The human gastric carcinoma cell lines, AGS, SNU-1, and KATO III, were obtained from Bioresource Collection and Research Center (BCRC; Hsinchu, Taiwan). MKN-45 was purchased from Japanese Collection of Research Bioresources (JCRB) Cell Bank (Osaka, Japan). Human gastric cancer cell line TMK-1, human cervical squamous cell carcinoma SiHa, and human colorectal adenocarcinoma cell line SW480 were gifted by Dr Wu (Department of Education and Research and Division of Gastroenterology, Taichung Veterans General Hospital, Taichung, Taiwan; current address is Taipei Veterans General Hospital and Faculty of Medicine, School of Medicine, National Yang-Ming University, Taipei, Taiwan) and their DNA short tandem repeats (STR) profile was confirmed at BCRC. Cells were cultured in RPMI-1640 (Thermo Fisher Scientific, Waltham, MA, USA). Cultures were supplemented with 10% fetal bovine serum, sodium bicarbonate (2%, w/v), l-glutamine (0.29 mg/mL), penicillin (100 units/ml), and streptomycin (100 µg/mL) (Thermo Fisher Scientific), and grown at 37°C in a humidified 5% CO2 incubator.
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7

Culturing Human Gastric Cancer Cells

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Human gastric cancer cell lines (MKN7, MKN45, MKN74, KATOIII, and NUGC3) were purchased from the Riken Bioresource Center (Cell Bank, Ibaraki, Japan) and the Japanese Collection of Research Bioresources (JCRB Cell Bank, Osaka, Japan). All cell lines were cultured in culture medium (RPMI 1640 medium [Sigma-Aldrich, St. Louis, MO] containing 10% heat-inactivated fetal bovine serum [FBS, Life Technologies, Carlsbad, CA], 100 U/mL of penicillin, 100 μg/mL of streptomycin, and 0.25 μg/mL of amphotericin B [Antibiotic-Antimycotic; Life Technologies]) at 37°C in 5% CO2 with 95% humidity.
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8

Gastric Cancer Cell Lines TP53 Profiling

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Seven gastric cancer cell lines were used: four cell lines with wt TP53 (MKN-45, NUGC-4, STKM-2, SNU-1), two cell lines with mutant-type (mt) TP53 (NUGC-3, STKM-1), and one cell line with null TP53 (KatoIII) [19] (link)–[21] (link). Cell lines with wt TP53 (MCF-7 breast cancer, HEK293 human embryonic kidney cells) and MRC-5 normal human fibroblasts were included as controls in this study. MKN-45, NUGC-4, KatoIII, and MRC-5 cell lines were obtained from RIKEN BRC Cell Bank (Tsukuba, Japan). SNU-1 and MCF-7 cell lines were purchased from the American Type Culture Collection (Rockville, MD). NUGC-3 and HEK293 cell lines were obtained from Health Science Research Resources Bank (Osaka, Japan). STKM-1 and STKM-2 cell lines were kindly provided by Dr. Shunsuke Yanoma (Yokohama City University, School of Medicine, Japan).
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9

Culturing Human Gastric Cancer Cell Lines

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The human gastric cancer cell lines KatoIII (RCB2088), MKN45 (RCB1001), and MKN74 (RCB1002) were purchased from RIKEN Bio Resource Center (Tokyo, Japan), and the human normal mesothelial cell line MeT-5A (CRL-9444) was purchased from ATCC (Manassas, VA, USA). These cell lines were maintained in RPMI medium (Nacalai Tesque, Kyoto, Japan) supplemented with 10% exosome-depleted fetal bovine serum (System Biosciences, CA, USA), 100 U/mL penicillin and 100 μg/mL streptomycin. The flasks were kept in a humidified incubator at 37°C with 5.0% CO2.
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10

Authentication and Culturing of Gastric Cell Lines

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Vero (African green monkey kidney normal cell line), MKN1, MKN28, MKN45, MKN74, NUGC3, NUGC4, KATOIII, and N87 (human gastric cancer cell lines) cells were obtained from the RIKEN BioResource Center. All cell lines were authenticated according to the Cell Line Verification Test Recommendations of ATCC Technical Bulletin no. 8 (2008). TMK-1 cells, a human gastric cancer cell line, were provided by Dr Eiichi Tahara (Hiroshima University, Hiroshima, Japan). All human gastric cancer cell lines were cultured in RPMI-1640 and Vero cells were cultured in Dulbecco's modified Eagle's medium both supplemented with 10% fetal bovine serum (Thermo Fisher Scientific, Inc.).
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