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3 protocols using 4 2 hydroxyethyl 1 piperazineethanesulfonic acid

1

Isolation of Intestinal Lamina Propria Cells

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LP extraction was performed according to Moreira’s protocol38 (link) with few modifications. In brief, feces and mucus were removed from the collected intestines. Tissue was flipped (inside out) and washed several times using Hank’s Balanced salt solution (HBSS) (Gibco) (without MgCl2, CaCl2, and MgSO4) solution supplemented with 5% FBS (Gibco) and 25 mM 4-(2-hydroxyethyl)-1-piperazineethanesulfonic acid (HEPES; Lonza). After cleaning, the entire gut segment was incubated for 20 min at 37°C in an orbital shaker with HBSS supplemented with 15 mM HEPES (Sigma) + 5 mM ethylenediaminetetraacetic acid (EDTA) (Invitrogen) 10% FBS + 0.015% or 1 mM 1.4-dithiothreitol (DTT; Roche). After incubation, tissues were washed two times with HBSS-EDTA solution supplemented with 25 mM EDTA. Tissues were chopped into smaller pieces and incubated with exVIVO (Lonza) media containing Liberase TL (Roche) 5 mg/80 ml + Dnase 30 mg/ml, grade 1 (Sigma-Aldrich) for 45 min in a 37°C shaker. The supernatant containing LP cells was meshed using a 100 μm and 70 μm cell strainer and washed with HBSS solution supplemented with 2 mM EDTA 5 mM HEPES and 5% FCS. The cell suspension was then purified using CD45 microbeads according to the manufacturer’s protocol (Miltenyi Biotec). The sorted cell suspension was resuspended in FACS buffer and stained for flow cytometry.
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2

Isolation and Analysis of mTECs

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Mouse work was performed at Harvard Medical School under specific-pathogen-free conditions using littermate controls. The strains used were C57BL/6J, B6.Aire−/−, B6.Foxn1-cre, B6.Ctla4-flox, and B6.Rag1−/. Additional details are available in SI Appendix, Materials and Methods.
Isolation of mTECs. mTECs were isolated according to published protocols (4 (link)). Briefly, thymi were dissected, chopped, and incubated for 15 min in Dulbecco’s Modified Eagle Medium ( Gibco) plus 2% fetal calf serum ( Gibco), 25 mM 4-(2-hydroxyethyl)-1-piperazineethanesulfonic acid ( Lonza), 0.5 mg/mL collagenase (Sigma), and 0.1 mg/mL DNase (Sigma), then for 15 min in the same buffer plus 0.5 mg/mL collagenase/dispase (Roche) and 0.1 mg/mL DNase, and then briefly with 10 mM ethylenediaminetetraacetic acid. Cells were stained with primary antibodies against CD45, Ly51, MHC-II molecules, and/or CD80 (all BioLegend). In some cases, cells were fixed using fixation/permeabilization buffer (eBioscience) and stained with anti-CTLA-4 antibody (BioLegend) in permeabilization buffer (eBioscience).
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3

Abiraterone Acetate: Characterization and Analysis

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Abiraterone, abiraterone acetate, their deuterated counterparts abiraterone-d4, abiraterone acetate-d4, N-oxide abiraterone sulfate, and abiraterone sulfate were kindly provided by Janssen Research & Development (Beerse, Belgium). Sigma-Aldrich (St. Louis, MO) supplied pancreatin from porcine pancreas (powder, suitable for cell culture, 4Â USP specifications). Methanol and ethanol absolute were purchased from VWR International (Leuven, Belgium). Acetonitrile and dimethyl sulfoxide were obtained from Acros-Organics (Geel, Belgium). Acetic acid was obtained from Chem-lab (Zedelgem, Belgium). Water was purified with a Maxima system (Elga Ltd., High Wycombe Bucks, UK). Methyl-tert-butyl ether was purchased from Merck (Overijse, Belgium). Ketamine (Anesketin) and xylazin (Xyl-M 2%) were obtained from Eurovet (Heusden, Belgium) and VMD (Arendonk, Belgium), respectively. Hanks' Balanced Salt Solution and 4-(2-hydroxyethyl)-1-piperazineethanesulfonic acid were obtained from Lonza (Verviers, Belgium). For the measurements of the pH, a Portamess 911 pH-meter (Knick GmbH & Company, Berlin, Germany) was used. All stock solutions were prepared in dimethyl sulfoxide.
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