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4 protocols using immpact amec red peroxidase substrate

1

Immunophenotyping of EAE Spinal Cords

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MKP-2+/+ and MKP-2−/− EAE mice were sacrificed at the planned dates. Following PBS perfusion, intact spinal cords were flushed out with PBS by hydrostatic pressure using a sterile 19G needle. Frozen spinal cord tissue sections were then stained with standard haematoxylin and eosin (H&E) staining or with anti-CD45, anti-CD4, anti-CD8, anti-CD11b and anti-CD11c antibodies (all purchased from eBioscience) followed by incubation with an appropriate biotin-conjugated secondary antibody (eBioscience, UK), horseradish peroxidise and ImmPACT AMEC red peroxidase substrate (Vector Lab, UK) for detection. Isotypes with matching IgG were used as negative controls for all antibody staining.
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2

Immunohistochemical Analysis of CD3 in Tumor Samples

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Primary tumor samples were processed as previously described [34 ]. Briefly, primary tumor samples were fixed in 4% paraformaldehyde-PBS overnight, and then transferred to 30% sucrose until tissue samples sank (2–3 d). Tissue samples were transferred to cryomolds and embedded in optimal-cutting temperature (OCT) compound (TissueTek). 10 μm cryosections were generated on a cryostat (Leica). Endogenous peroxidase activity was neutralized (Bloxall, Vector Laboratories) before samples were permeabilized (0.5% Triton X-100, TBS) and blocked (5% horse serum, Vector). Immunohistochemical labeling was performed for CD3 (Biolegend, 300302, 3 h RT). CD3 was developed with a peroxidase secondary (ImmPRESS VR anti-rabbit IgG, Vector) and ImmPACT AMEC Red Peroxidase Substrate (Vector). Tissue samples were counterstained with Hematoxylin QS (Vector, 45 s, RT), developed in a bluing solution (0.1% NaCO3/H2O, 1 min) and coverslipped with Fluoro-Gel with Tris buffer (Electron Microscopy Services). Samples were imaged on a Nikon Eclipse.
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3

Immunohistochemical Analysis of YEZV Antigen

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Formalin-fixed, paraffin embedded tissues were sectioned into 3 μm and stained with hematoxylin-eosin or used for immunohistochemical staining (IHC). IHC was performed using YEZV-N peptide (POS: 165–182) immunized rabbit serum (1:20,000) (Cosmo Bio, Tokyo, Japan) or anti Iba1 goat polyclonal antibody (1:500, #001–27991, Wako, Osaka, Japan) as primary antibodies. For YEZV antigen detection, peroxidase-labeled goat anti-rabbit IgG polyclonal antibody (Nichirei Bioscience, Tokyo, Japan) and DAB were used as secondary antibodies and substrates, respectively. In the Iba1 and YEZV antigen double staining experiments, ImmPRESS (Peroxidase) Polymer Anti-Goat IgG Reagent (Vector laboratories, California, USA) and alkaline phosphatase-labeled goat anti-rabbit IgG polyclonal antibody (Nichirei Bioscience, Tokyo, Japan) were used as secondary antibodies and ImmPACT AMEC Red Peroxidase Substrate (Vector laboratories, California, USA) and Vector Blue (Vector laboratories, California, USA) as substrates. All images were acquired using Nikon ECLIPSE 80i light microscopy (Nikon, Tokyo, Japan).
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4

Immunohistochemical Detection of Deiminated Proteins

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Deiminated proteins were detected by using an anti-citrulline detection kit (17–347B-1, Millipore). Briefly, paraffin-embedded tissue sections were deparaffinized, rehydrated, and incubated in modification medium (0.0125% FeCl3, 0.125 M H2SO4, 0.1 M H3PO4, 0.25% 2,3-butanedione monoxime, 0.125% antipyrine and 0.25 M acetic acid) at 37 °C for 3 hours. Sections were subsequently blocked in 5% nonfat dry milk in PBS for 1 hour at room temperature, incubated with human anti-modified citrulline antibody (1 ug/ml) for 1 hour at 37°C, and incubated with HRP-conjugated goat anti-human antibody (1:500) for 1 hour at room temperature. Sections were then incubated with ImmPACT™ AMEC Red Peroxidase Substrate (SK-4285, Vector Laboratory, Burlingame, CA) for 30 minutes at room temperature and mounted with VectaMount® AQ Aqueous Mounting Medium (H-5501, Vector Laboratory, Burlingame, CA).
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