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14 protocols using methanol activated pvdf membrane

1

Western Blot Analysis of Testis Proteins

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Mouse testis samples were lysed using RIPA buffer (Sigma Aldrich, St. Louis, MO, USA) containing a protease inhibitor cocktail (Sigma Aldrich, St. Louis, MO, USA), and 10 µg/mL total protein was separated on 10% polyacrylamide gel via SDS-PAGE, followed by transfer on methanol-activated PVDF membrane (Merck Millipore, Burlington, MA, USA). The membranes were blocked in 5% non-fat powdered milk for 1 h at room temperature, after which they were incubated with primary antibodies to Akt (pS473) + total Akt Kit (ab126433, abcam, Cambridge, UK), ERK1 (phosphor) + total ERK (ab126445, abcam), p38 MAPK alpha + total p38 MAPK alpha (ab126453, abcam), cyclinD1 (ab16663, abcam) and β-actin (A5441, Sigma Aldrich, St. Louis, MO, USA), overnight, at 4 °C. The next day, after 3 washes with 0.1% PBST, the membranes were incubated with the corresponding secondary antibodies: goat α-mouse HRP or goat α-rabbit HRP (Thermo Scientific) for 1 h at room temperature. The membranes were developed with Immobilon Forte HRP Substrate (Merck Millipore, Burlington, MA, USA) using a Luminescent Image analyzer LAS-3000 (FUJIFILM, Tokyo, Japan). The relative protein expression was quantified via densitometric analysis with the Image J software (Version 1.53r).
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2

Quantification of Recombinant Galectin-3

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Following SDS-PAGE56 (link) of the recombinant full-length hGal3 and its fragment P113-hGal3, the polypeptides were electro-transferred onto a methanol-activated PVDF membrane (Merck Millipore, Billerica, MA, USA). After washing in phosphate-buffered saline (115 mM NaCl, 15 mM Na2HPO4, 4 mM KH2PO4; PBS) containing 0.01% v/v Tween 20 (PBS/T0.01) the membrane was incubated with the chimeric αhGal3-Fab-PAS200-Cy5.5 (2 µg ml−1 in PBS/T0.01)9 (link) for 1 h at room temperature. After washing the membrane with PBS/T0.01, fluorescence was detected with an Odyssey fluorescence scanner (excitation: 685 nm; emission: 720 nm; LI-COR, Lincoln, NE, USA) and evaluated using Quant version 12.2 software (TotalLab, Newcastle-Upon-Tyne, UK).
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3

Western Blot Analysis of TGF-β1 Signaling

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Cells were seeded at 10 x 104 cells/well into 6-well plates and incubated in presence or absence of 10 ng/ml TGF-ß1 with or without terfenadine, ebastine, and solifenacin at 10 μM for 72h. Protein was isolated using RIPA buffer (Sigma Aldrich, UK). 20 μg of protein mixed with Li-Cor 4x protein loading buffer (Li-Cor, UK) and heat denaturated at 95°C under reducing conditions. Samples were then loaded onto Any kD Mini-PROTEAN® TGX Precast Protein Gels (Bio-Rad) along with a protein ladder (Bio-Rad). After gel electrophoresis, the separated protein was transferred onto a methanol-activated PVDF membrane (Millipore) by wet blotting at 350 mA for 1h. The membrane was washed and left to dry for 1h before being blocked with Li-Cor Intercept Blocking Buffer (Li-Cor) for 1h. The membranes were incubated overnight with primary antibodies (anti–α-SMA antibody, 1:3000 (Sigma-Aldrich); anti-fibronectin antibody, 1:1000 (ThermoFisher); anti-GAPDH, 1:10,000 (Abcam)) at 4°C on a shaker. Membranes were washed 4x with Tris-buffered saline containing 0.1% Tween 20 before incubation with secondary antibodies (Li-Cor, 1:10,000) for 1h on a shaker in darkness. This was followed by 4 washes with Tris-buffered saline containing 0.1% Tween 20. Blots were visualised using an infrared imaging system (Odyssey CLx imager; LI-COR) at 700 and 800 nm wavelengths simultaneously.
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4

Protein Expression Analysis by Western Blot

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Protein samples of tissue and transfected cells were harvested with RIPA buffer (Sigma-Aldrich). Concentration of protein lysate was quantified by using bicinchoninic acid protein assay, BCA(Sigma). Equal amounts of Proteins were resolved with 7–10% SDS-PAGE gel, subsequently transferred to the methanol-activated PVDF membrane (Millipore, Beijing, China). The membranes were blocked with 5% non-fat milk in Tris-buffered saline Tween-20 (TBST) for 2 hr at room temperature (RT) and then incubated overnight with the following antibodies: anti-MECP2, anti-P-REX2, anti-P473-AKT (Abcam, diluted 1/1000), anti-BMI1, anti-P16, anti-p21 (Cell Signaling Technology, diluted 1/1000) and anti-β-actin (Santa Cruz 1/1000) which were chosen as a loading control, followed by secondary HRP-conjugated anti-rabbit or anti-mouse (Santa Cruz).
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5

Western Blot Protein Analysis

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Samples were loaded on NuPAGE Bis-Tris 4–12% gradient polyacrylamide gels (Thermo Fisher Scientific). SDS-PAGE was conducted in either MES or MOPS SDS running buffer (Thermo Fisher Scientific) at 200 V for 40 min. As a molecular weight marker, a pre-stained PageRuler was used (Thermo Fisher Scientific). Proteins were then transferred to a methanol-activated PVDF membrane (Millipore) for 1 hr at 100 V, in blot buffer (40 mM glycine, 25 mM Tris base, and 20% methanol). After protein transfer, PVDF membranes were blocked for 1 hr at room temperature with PBS containing 5% milk. After that, two washing steps of 5 min each were performed in PBS-T (PBS supplemented with 0.05% Tween-20) at room temperature prior to the addition of a primary antibody solution (in PBS-T supplemented with 2% BSA and 0.02% Na-azide). After 1 hr incubation at room temperature, blots were washed four times with PBS-T prior to the addition of fluorescently labeled secondary antibodies (goat anti-mouse AlexaFluor 680 [Thermo Fisher Scientific] and goat anti-rabbit IRDye 800CW [LI-COR Biosciences]). After 30 min incubation at room temperature, blots were washed four times with PBS-T and once with PBS. Imaging was performed with the LI-COR Odyssey CLx system and analyzed with Image Studio Lite (version 5.0.21, LI-COR Biosciences).
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6

Western Blot Analysis of Whole Cell Lysates

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Frozen cell pellets were sonicated and quantified using the DC protein assay (Bio-Rad). Generally, 15 – 25 μg of whole cell lysate was loaded in each well, separated using 8% or 12% SDS-PAGE, transferred to a methanol-activated PVDF membrane (Millipore), and blocked with 5% non-fat milk or 5% BSA (Fisher) in Tris-buffered saline with 0.5% (v/v) Tween-20 (TBST). Primary antibody solutions were prepared in Odyssey Blocking Buffer (Li-Cor) according to manufacturer’s recommendations and incubated at 4° C overnight. The following species-matched secondary antibodies were used and diluted to indicated concentrations in TBST: goat-anti-rabbit HRP (Thermo-Fisher, 32460) and goat-anti-mouse HRP both at 1:500 (Thermo-Fisher, 32430), donkey-anti-mouse 647 at 1:1000 (Life Technologies, A31571), Goat-anti-rabbit secondary near-IR 700 antibody at 1:5000 (Azure AC2135), Goat-anti-mouse secondary near-IR 800 antibody at 1:5000 (Azure AC2128). Blots were incubated at room temperature for one hour, and imaged using an Azure c600. Acquired images were processed for publication and protein band densitometry measurements were perform on ImageJ software (NIH). See Supporting Experimental Procedures for commercial antibody sources and dilutions.
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7

Apoptosis and Cell Cycle Regulation Assay

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The cells were lysed in RIPA buffer with protease and phosphatase inhibitors (Roche, Beijing, China). The protein was separated in a 10% polyacrylamide gel and transferred to a methanol-activated PVDF membrane (Millipore, Beijing, China). The membrane was blocked for 2 h in Tris-buffered saline Tween-20 containing 5% skimmed milk and then probed with caspase-3, cleaved 85 kDa fragment of PARP, PARP, cleaved, active caspase-3 (Cell Signaling Technology, Beverly, MA, USA), anti-Akt, anti-phospho-Akt 308 and anti-phospho-Akt 473 (Abgent, San Diego, USA), anti-p21, anti-p27, anti-cyclinD1 and anti-PTEN (Abcam, Cambridge, UK) and GAPDH (Bioworld, Nanjing, China) overnight at 4 °C. After a 1 h incubation with anti-mouse or anti-rabbit HRP-conjugated secondary antibody, the protein level was detected.
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8

Western Blot Analysis of Signaling Proteins

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Primary IGF-1R-β antibodies were from Cell Signaling Technology (#9750) (Boston, MA, USA) and Abgent(#3C8B1)(Wuxi, China), primary IRS-2 antibodies were from Cell Signaling Technology (#4502) (Boston, MA, USA) and Abgent(#EP976Y)(Wuxi, China), primary Cyclin A2 (#1547-1) and CDK2(#1134-S) antibodies were from Epitomics (Burlingame, CA, USA), primary MEK1/2(#AF6385) was from Affinity Biosciences (Cincinnati, USA), primary p-MEK1/2(#9154), ERK1/2 (#4695), Akt(#4691P) and p-Akt(#4060P) antibodies were from Cell Signaling Technology (Boston, MA, USA), primary p-ERK1/2 antibody was from Bioworld (#BS5016) (Nanjing, China) and β-actin antibody was from Santa Cruz (sc-47778).
For Western blot, the protein samples of tissue and transfected cells were harvested with RIPA buffer(Sigma-Aldrich). The equal amounts of protein lysates were separated by 7-10% SDS-PAGE and transferred to a methanol-activated PVDF membrane (Millipore, Beijing, China). The membrane was blocked with 5% non-fat milk in Tris-buffered saline Tween-20(TBST) for 2h and incubated with primary antibody overnight at 4 °C, followed by secondary anti-rabbit or anti-mouse(Pierce). Protein levels were normalized to β-actin.
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9

Protein Expression Analysis in BC Cells

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The BC cells were harvested with RIPA lysis buffer (CST, Boston, China) after 48 h of transfection. The equal amounts of protein lysates were separated by 10% SDS-PAGE and transferred onto a methanol-activated PVDF membrane (Millipore, USA). The membranes were incubated with the following primary antibodies: AKT3 (1:2000, Abcam), HDAC1 (1:1000, Abcam) overnight at 4 o C. The membranes were incubated with secondary antibody for 2 h at room temperature, followed with ECL reagent (Pierce, USA) for chemiluminescence detection, as described previously [14] .
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10

Immunoblotting Analysis of Apoptosis and Cell Cycle Markers

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Harvested cell pellets were lysed in (100–200 μl) of RIPA buffer (Sigma-Aldrich) and then proteins were extracted and quantified. 10 µg of extracted lysate was resolved in SDS-polyacrylamide gel electrophoresis (SDS-PAGE), followed by electroblotting onto methanol-activated PVDF membranes (Millipore, USA) using a semidry transfer unit (ATTO, Japan). Immunoblotting was performed with antibodies against caspase-9 (sc-7885), caspase-3 (sc-7148), Cyclin D1 (sc-450), Cyclin A (sc-239), Vimentin (sc-6260), β-catenin (sc-7963), CDK4 (sc-260), CDK2 (sc-163), PARP 1/2 (sc-7150), ATR (SC-28901), pATR (sc-109912), purchased from Santa Cruz. hnRNP-K (#4675), MMP-9 (#2270), p21WAF1 (#2947), SMAD-2/3 (#8685) and CHK-1 (#2345) were procured from Cell Signaling Technologies. Antibody for CARF (rabbit polyclonal) was generated endogenously in the laboratory. The immunoblots were incubated with horseradish peroxidase-conjugated goat anti-mouse or anti-rabbit antibodies (Santa Cruz Biotechnology) and detected using ECL substrate (GE Healthcare, NJ, USA). Densitometric quantitation of the representative immunoblots was carried out using the ImageJ software from NIH (National Institute of Health). All the experiments were performed in triplicate.
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