The largest database of trusted experimental protocols

8 protocols using tb green premix taq

1

RNA Extraction and Real-Time PCR Analysis

Check if the same lab product or an alternative is used in the 5 most similar protocols
Cells were cultured as described above. The cell culture supernatant was removed and the cells were washed twice with 2 mL ice cold PBS. TRIzol reagent (Invitrogen, Carlsbad, CA, USA) was added to the cells and total RNA was extracted using PureLink RNA Mini Kits. The amount of RNA was quantified using a NanoDrop 1000 (ND-1000; Thermo Scientific, Rockford, IL) spectrophotometer. cDNA was synthesized using PrimeScript RT reagent kits (Perfect Real Time; Takara Bio, Shiga, Japan). The mRNA expression of CTL1, TNF-α, IL-6, MMP9, and β-actin were determined using TB Green Premix Taq (Takara Bio). Primer sequences are shown in S2 Table. Real-time PCR was performed using a LightCycler 96 instrument (Roche Diagnostics GmbH, Mannheim, Germany). The mRNA of the target genes were normalized to those of β-actin.
+ Open protocol
+ Expand
2

Optimized Cell Culture Procedures

Check if the same lab product or an alternative is used in the 5 most similar protocols
DMEM high glucose medium (lot number: 201809) was purchased from gibco; Sijiqing fetal bovine serum (lot number: 20180325) was purchased from Hangzhou Tianhang Biotechnology Co., Ltd.; (PBS) Phosphate buffer (batch number: 20180928), penicillin-streptomycin mixed solution (batch number: 201803), 0.25% trypsin digestion solution (batch number: 201710), EDTA-free trypsin digestion solution (lot number: 201901) were purchased from Solarbio, USA; Enhanced CCK-8 reagent was purchased from Shanghai Shangbao Biotechnology Co., Ltd.; (DMSO) dimethyl sulfoxide (lot number: EZ1609C224) was purchased from Biofroxx; AnnexinV-FITC/PI apoptosis double staining kit (lot number: 20181217), 1 × Binding Buffer (lot number: 20190114) were purchased from Jiangsu KGI Bio; Homo-BAX-R, Homo-BAX-F, Homo-Bcl2-R, Homo-Bcl-2-F, Homo-CASP3-R, Homo-CASP3-F, Homo-ACTB-R, Homo-ACTB-F were purchased from Shanghai Shenggong Synthetic Company; RNA extraction kit (article number: 9767, batch number: 20181124), reverse transcription kit (article number: RR036A), TB Green Premix Taq (article number: RR820) were purchased from TAKARA; absolute ethanol (article number: 64–17-5) was purchased from Guangzhou Chemical Reagent Factory; 25 cm air-permeable culture flask, 96-well plate, 6-well plate, and cryotube were purchased from corning; 0.22 μM syringe filter was purchased from Millipore.
+ Open protocol
+ Expand
3

Quantitative RT-PCR Analysis of Zebrafish Gene Expression

Check if the same lab product or an alternative is used in the 5 most similar protocols
Total RNA was isolated from fifteen embryos using TRIzol reagent and reverse-transcribed to cDNA using M-MLV reverse transcriptase (Takara, Shiga, Japan). qRT-PCR was carried out using TB Green Premix Taq (Takara, Shiga, Japan) with a real-time PCR detection system (Bio-Rad, Hercules, CA, USA). All primer sequences of target genes are listed in the Table S3. The expression level of a particular gene transcript was calculated based on the standard curve and normalized by the β-actin levels, as no expression changes of β-actin were observed in zebrafish among different treatments. The gene expression levels were calculated by a 2−ΔΔCT method. The data were reported as fold increases of the control.
+ Open protocol
+ Expand
4

RNA Extraction and Quantitative PCR

Check if the same lab product or an alternative is used in the 5 most similar protocols
Total RNA was isolated from cells or tissues using RNeasy Minikit (Qiagen, Hilden, Germany) according to the instructions from manufacturer. RNA was reversely transcribed using PrimeScript RT Master Mix (TaKaRa, Beijing, China) with random hexamers. Real-time PCR was performed using TB Green Premix Taq (TaKaRa). The relative gene expression was quantified by 2−ΔΔCT method using ABI7500 System Sequence Detection Software (Applied Biosystems, Foster, CA, USA). To normalize the absolute quantification according to a single reference gene, kinetic PCR reactions has to be performed for β-actin on all experimental samples and the relative abundance values are calculated for internal control as well as for the target gene. For each target gene sample, the relative abundance value obtained is divided by the value derived from the control sequence (β-actin) in the corresponding target gene. The normalized values for different samples can then directly be compared. The primer sequences were shown in Table 2.
+ Open protocol
+ Expand
5

Quantitative Real-Time PCR for Gene Expression

Check if the same lab product or an alternative is used in the 5 most similar protocols
By following the manufacturer’s instructions, total RNA was obtained from cells using QIAzol lysis reagent (QIAGEN, Hilden, DEU), and DNase I-treated RNA (1 μg) was reverse-transcribed into cDNA using a RevertAid first-strand cDNA synthesis kit (Thermo Fisher Scientific, Waltham, MA, USA). The qRT-PCR reaction was utilized using the CFX Connect Real-Time PCR Detection System (Bio-Rad, Hercules, CA, USA) using TB Green Premix Taq (Takara Bio Inc., Kusatsu, JPN). Gene expression was quantified using the standard 2−∆∆Ct method as previously described [26 (link)]. The mRNA expression level of each target gene was normalized to that of the GAPDH control.
+ Open protocol
+ Expand
6

Comprehensive RNA Extraction and qRT-PCR Analysis

Check if the same lab product or an alternative is used in the 5 most similar protocols
Total RNA was isolated with the easy-blue total RNA extraction kit (Intron, #17061, Seongnam, Korea). 1 µg of total RNA was converted to cDNA with the Prime Script RT Master Mix (Takara, #RR036A, Kusatsu, Japan) in accordance with the manufacturer’s protocol. Quantitative real-time PCR analysis was performed using TB green premix taq (Takara, #RR820A, Kusatsu, Japan) on a LightCycler 480 II (Roche, Basel, Switzerland) in accordance with the manufacturer’s protocol. Primer information follows (Table 1).
+ Open protocol
+ Expand
7

Quantitative Analysis of Vascular Inflammation

Check if the same lab product or an alternative is used in the 5 most similar protocols
After the iliofemoral arteries were excised, neointimal tissue was peeled from the media and adventitia and divided into 5-mm segments. Total RNA was isolated using TRIzol reagent (Invitrogen, Carlsbad, CA, USA) and PureLink RNA mini kits (Life Technologies). RNA was reverse transcribed into complementary DNA (cDNA) using Primescript RT Master Mix Kits (Takara Bio, Kusatsu, Japan). The amount of RNA was quantified using a spectrophotometer (ND-1000, Thermo Scientific, Rockford, IL, USA). The mRNA expression levels of interleukin (IL)-6, matrix metalloproteinase (MMP) 9, tissue factor (TF), tissue necrosis factor (TNF)-α, and hydroxymethylbilane (HMBS) were determined using TB Green Premix Taq (Takara Bio) as described in S1 Table. The mRNA levels of the target genes were normalized to those of HMBS, and qRT-PCR analysis was performed using a LightCycler 96 system (Roche Diagnostics GmbH, Mannheim, Germany).
+ Open protocol
+ Expand
8

Quantitative RT-PCR Analysis of Gene Expression

Check if the same lab product or an alternative is used in the 5 most similar protocols
Total RNA from cultured cells was extracted by RNAiso Plus reagent (Takara, Dalian, China) according to the manufacturer’s protocol. Then, the RNA sample was reverse transcribed into cDNA by PrimeScript RT Master Mix (Takara). RT–qPCR was performed using TB Green Premix Taq (Takara) following the standard procedure on an ABI PRISM 7500 sequence detector (Applied Biosystems, USA). RT–qPCR conditions were as follows: 30 s at 95 °C, followed by 40 cycles of 5 s at 95 °C and 34 s at 60 °C. The relative levels of target genes were compared with the internal reference GAPDH and calculated by the 2−ΔΔCt method. The primers are shown in Table 1. All RT-qPCR experiments were repeated independently three times (n = 3 repeated wells).

Primer sequences used in this study

PrimerSequences (5′–3′)Products (bp)
E-cadherin

(F)5′-CGGGAATGCAGTTGAGGATC-3′

(R)5′-AGGATGGTGTAAGCGATGGC-3′

201
Vimentin

(F)5′-GAGAACTTTGCCGTTGAAGC-3′

(R)5′-GCTTCCTGTAGGTGGCAATC-3′

163
α-SMA

(F)5′-GGTGACGAAGCACAGAGCAA-3′

(R)5′-CAGGGTGGGATGCTCTTCAG-3′

150
GAPDH

(F)5′-GAGTCAACGGATTTGGTCGT-3′

(R)5′-GACAAGCTTCCCGTTCTCAG-3′

185
+ Open protocol
+ Expand

About PubCompare

Our mission is to provide scientists with the largest repository of trustworthy protocols and intelligent analytical tools, thereby offering them extensive information to design robust protocols aimed at minimizing the risk of failures.

We believe that the most crucial aspect is to grant scientists access to a wide range of reliable sources and new useful tools that surpass human capabilities.

However, we trust in allowing scientists to determine how to construct their own protocols based on this information, as they are the experts in their field.

Ready to get started?

Sign up for free.
Registration takes 20 seconds.
Available from any computer
No download required

Sign up now

Revolutionizing how scientists
search and build protocols!