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2 protocols using dnasa

1

Quantitative Gene Expression Analysis

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Total RNA was isolated from liver samples using Trizol (Invitrogen, Paisley, United Kingdom), according to the supplier’s protocols. Purified RNA (2 μg) was then treated with DNasa (DNA free kit; Ambion, Austin, TX, USA) and used to generate first-strand cDNA with M-MLV reverse transcriptase (Invitrogen), using random hexamers (Invitrogen, Paisley, United Kingdom) and dNTP mix (Bioline, London, United Kingdom), according to the manufacturer`s protocol. The resultant cDNA was amplified with specific primer for mice in a total volume of 10 μL. Gene specific primer sequences used are shown in Additional file 1: Table S2. Primers were optimized to yield 95%-100% of reaction efficiency with PCR products by development in agarose gel to verify the correct amplification length. Real Time PCR was performed in a Strategen Mx3000P System (Agilent Technologies, California, USA) following the manufacturer`s recommendation (Applied Biosystems, Foster City, CA, USA). All the expression levels of the target genes under study were normalized by the expression of β-actin as internal control (Applied Biosystems, Foster City, CA, USA). Fold changes between groups was calculated by the 2(-ΔΔCt) method.
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2

Quantitative RT-PCR Gene Expression Analysis

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Total RNA from individuals was extracted with TRIzol reagent (Invitrogen, Thermo Fisher Scientific) as described by the manufacturer's instruction. One microgram of RNA was reverse transcribed into cDNA using oligo-dT and MMLV-RT (Moloney Murine Leukemia Virus Reverse Transcriptase, Invitrogen, Thermo Fisher Scientific). Before cDNA synthesis, genomic DNA in the samples was digested with DNAsa (Ambion, Thermo Fisher Scientific) according to the manufacturer's instructions. The cDNA was used as template for real-time PCR analysis. Reactions were performed on a Step-one Real-time PCR machine from Applied Biosystems (California, USA) with Fast Universal SYBR Green Master Rox (Roche, Merck). The primer sequences are listed in S2 Table . To verify the purity of the PCR products, a melting curve was produced after each run. LinRegPCR was the program employed for the analysis of real time RT-PCR data (21) . The transcript relative quantification results were determined from the ratio between the starting concentration value of the analysed mRNAs and the reference Actin mRNA in each sample. The mean and standard error was calculated from values of the transcript quantification obtained in each biological replicate.
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