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5 protocols using anti cd4

1

Immunological Antibody Characterization Protocol

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The table below describes the commercial antibodies used, their catalog numbers, and their company.
Western blot and immunofluorescence antibodies.
Anti-Alix (sc-49267)(Santa Cruz Biotechnology)
Anti-β-actin (MA1-91399)(Thermo Fisher Scientific)
Anti-β-actin (sc-47778)(Santa Cruz Biotechnology)
Anti-CD4 (2009-09)(Novocastra)
Anti-CD63 (sc-15363)(Santa Cruz Biotechnology)
Anti-EEA1 (610456)(BD Biosciences)
Anti-Flotillin1 (ab41927)(Abcan)
Anti-GAPDH (G9545)(Sigma-Aldrich)
Anti-GFPGift from R. Hedge (MRC)
Anti-ΗΑ (H3663)(Sigma-Aldrich)
Anti-HLA-A (15240-1-AP)(Proteintech)
Anti-IFITM1 (60074-1-Ig)(Proteintech)
Anti-IFITM2 (66137-1-Ig)(Proteintech)
Anti-IFITM3/2 (11714-1-AP)(Proteintech)
Anti-Lat1 (sc-54229)(Santa Cruz Biotechnology)
Anti-TfR (136800)(Thermo Fisher Scientific)
Anti-Tsg101 (976126)(BD Bioscencies)
Anti-Nef (2949)(NIH AIDS Reagent Program)
Anti-Neurexin1 (ab77596)(BD Bioscencies)
Anti-Syntenin1 (ab133267)(Abcan)
Anti-IgG Mouse-HRP(GE)
Anti-IgG Rabbit-HRP(GE)
Anti-IgG Goat-HRP(GE)
Anti-IgG Mouse-Alexa 594(Thermo Fisher Scientific)
Anti-IgG Rabbit-Alexa 647(Thermo Fisher Scientific)
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2

Skin Biopsy for Phage Id Challenge

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Patient 7 was chosen to undergo a skin biopsy of the site of phage Id challenge, since this patient displayed a positive Id-related delayed type hypersensitivity reaction and an Id-specific humoral response. Staining was performed with hematoxylin-eosin and anti-CD8 (Dako GmbH, Hamburg, Germany) and anti-CD4 (Novocastra, Berlin, Germany) antibodies for immunohistochemistry analysis.
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3

Immunohistochemistry and Elastic Staining of FFPE Tissues

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FFPE tissues were sectioned at 5 mm thickness and analyzed by IHC and EVG staining. The following antibodies were used: anti-TP53 (Santa Cruz Biotechnology, Dallas, TX, USA, catalog number: sc-47698), anti-CDKN2A/p16 (Roche Diagnostics, Cat #6695221001), anti-SMAD4 (Santa Cruz Biotechnology, Cat #sc-7966), anti-CD4 (Leica Biosystems, Wetzlar, Germany, Cat #CD4-368-L-CE), anti-CD8 (Roche Diagnostics, Cat #5493846001), anti-FOXP3 (Abcam, Cambridge, UK, Cat #ab20034), anti-CD45RO (BioGenex Laboratories, San Ramon, CA, USA,Cat #AM113-5M), anti-CD68 (ProteinTech Illinois, USA, Cat #66231-2-Ig), anti-CD206 (ProteinTech Illinois, USA, Cat #60143-1-Ig) and anti-α-SMA (Santa Cruz Biotechnology, catalog number: sc-53142). EVG staining was performed using an Elastic Stain Kit (Abcam, Cat #ab150667) according to the manufacturer’s protocol.
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4

Comprehensive Hematological and Immunological Profiling

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CBC was measured by an automated blood count (Hemavet System 950FS). May-Grünwald-Giemsa staining (Thermo Fisher Scientific, catalog 22-050-272) was used to stain PB smears. Histological analyses were performed as previously described (83 (link)), and samples were stained with H&E.
The following antibodies were used for IHC analysis: anti-CD68 (Leica Biosystems, PA0273); anti-CD69 (Abcam, 202909); anti-Ki67 (Cell Signaling Technology, 12202S; Leica Biosystems, PA0230) anti-galectin/MAC2 (Abcam, ab76245); anti-CD3 (Cell Signaling Technology, 99940S); anti-CD4 (Leica Biosystems, PA0427); anti-CD8 (Leica Biosystems, PA0183); and anti-FOXP3 (Abcam, ab215206). For BM and liver fibrosis analyses, a reticulin staining kit (MilliporeSigma, HT102A-1KT) was used.
For plasma analyses, PB samples were collected in heparinized tubes and centrifuged, and plasma was frozen or directly assayed. Plasma was used for the cytokine array analyses (R&D Systems, ARY028); the ferritin ELISA kit (ALPCO, 41-FERMS-E01); the sCD25 ELISA kit (G-Biosciences, IT5809); and chemistry profiling (HESKA; catalog 6330, COMP/EWRAP).
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5

SARS-CoV-2 Lung Histopathology and Immune Profiling

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Between August 2020 and March 2021, histological lung specimens were obtained from eight SARS-CoV-2-positive patients for antemortem evaluation after bronchoscopy and cryotransbronchial biopsy. The clinical records, radiological, and pathological findings were retrospectively compiled. Transbronchial biopsy specimens were available in all patients, taken from the most prominent areas of the interstitial ground-glass opacities. The mean number of lung biopsy fragments per case was three (range 2–4).
Biopsy specimens were fixed in 10% formalin, embedded in paraffin wax, and sectioned at 5 μm. Sections were stained with haematoxylin and eosin. Each biopsy specimen was evaluated semi-quantitatively for the following parameters: the presence or absence of reactive pneumocytes; alveolar macrophages; lymphocytes; neutrophils; plasma cells, fibroblastic foci; peribronchiolar inflammation; and viral cytopathic effect.
Immunohistochemical labelling was performed with antibodies directed against the following proteins: CD3 (anti-CD3; Leica Biosystems, UK); CD4 (anti-CD4; Leica Biosystems); CD8 (anti-CD8; Leica Biosystems); CD20 (anti-CD20; Leica Biosystems); and SARS-CoV-2 nucleocapsid protein.2 (link) CD4 and CD8 staining were scored as percent-positive immune cell: 0, negative; 1, 1–30%; 2, 31–70%; and 3, 71–100% positive immune cell.
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