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4 protocols using fast taqman mix

1

Quantitative Real-Time PCR Analysis

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Cells were dissolved in the TRIzol reagent (Invitrogen, 12044977) for total RNA extraction. RNA quality was confirmed by optical density measurement. cDNA was synthesized from 1 μg of total RNA using random primers and Moloney murine leukemia virus reverse transcriptase (MultiScribe, Applied Biosystems, 10117254). The cDNA was used for qRTPCR in an Mx3005P Real-Time PCR System (ThermoFisher Scientific). Reactions were carried out in duplicate for all conditions using a Sybr Green Master mix (ThermoFisher Scientific, 4344463) or Fast Taqman mix (ThermoFisher Scientific, 4444557) and expression of mouse Gapdh mRNA (Life Technology, 433764T) was used as endogenous control in the comparative cycle threshold method (2ΔΔCt). Primer sequences used are listed in Supplementary Table S2.
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2

RNA Extraction and Quantitative RT-PCR

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Total RNA was extracted from frozen tumors, lungs, and cultured cells with TRIzol (Invitrogen, 12044977). cDNAs (synthesized using random primers and Moloney murine leukemia virus reverse transcriptase (MultiScribe, Applied Biosystems, 10117254)) were used for qRT–PCR in an Mx3005P Real‐Time PCR System (Thermo Fisher Scientific) with Sybr Green Master mix (Thermo Fisher Scientific, 4344463) or Fast Taqman mix (Thermo Fisher Scientific, 4444557). Expression of mouse Gapdh mRNA (Life Technology, 433764T) was used as endogenous control in the comparative cycle threshold method (2‐ΔΔCt) with the listed primers (Appendix Table S7).
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3

Quantitative Gene Expression Analysis

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Quantitative real-time PCR (qRT-PCR) was performed on 7900HT Fast Real-Time PCR system (Applied Biosystems) using Fast Taqman Mix and TaqMan Gene expression assays and following manufacturer’s protocol. The cycling conditions are: 95°C 20 s and 40 cycles of 95°C 3 s followed by 60°C 30 s. TaqMan Gene expression assays (Applied Biosystems) used: LIF (Hs01055668_m1), PAEP (Hs01046125_m1), SPP1 (Hs00959010_m1) and HSD17B2 (Hs00157993_m1). Expression levels were calculated applying the comparative Cycle threshold (Ct) method. Relative expression levels were normalised to the geometric mean of three housekeeping genes HPRT1 (Hs02800695_m1), TOP1 (Hs002432257_m1) and TBP (Hs00427620_m1) using Microsoft Office Excel.
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4

Quantitative Gene Expression Analysis

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Quantitative real-time PCR (qRT-PCR) was performed on 7900HT Fast Real-Time PCR system (Applied Biosystems) using Fast Taqman Mix and TaqMan Gene expression assays and following manufacturer’s protocol. The cycling conditions are: 95°C 20 s and 40 cycles of 95°C 3 s followed by 60°C 30 s. TaqMan Gene expression assays (Applied Biosystems) used: LIF (Hs01055668_m1), PAEP (Hs01046125_m1), SPP1 (Hs00959010_m1) and HSD17B2 (Hs00157993_m1). Expression levels were calculated applying the comparative Cycle threshold (Ct) method. Relative expression levels were normalised to the geometric mean of three housekeeping genes HPRT1 (Hs02800695_m1), TOP1 (Hs002432257_m1) and TBP (Hs00427620_m1) using Microsoft Office Excel.
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