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12 protocols using tlrl imq

1

TLR Ligand Activation Assay

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The following ligands were used: Pam3CSK4 (TLR1/2; tlrl-pms; Invivogen, 200 ng/ml), FSL1 (TLR2/6; tlrl-fsl; Invivogen, 100 ng/ml), Poly (I:C) (TLR3; vac-pic; Invivogen, 10 μg /ml), LPS K12 (TLR4; tlrl-eklps; Invivogen, 200 ng/ml), Flagellin (TLR5; tlrl-stfla; Invivogen, 100 ng/ml), R837 (TLR7; tlrl-imqs; Invivogen, 10 μg/ml), R848 (TLR7/8; tlrl-r848; Invivogen, 100 ng/ml), CL075 (TLR8; tlrl-c75; Invivogen, 5 μg/ml), and CpG2006 (TLR9; tlrl-2006; Invivogen, 10 μM), and human interferon-beta 1a (100U/ml) was purchased from PeproTech GmbH (#300–02BC; Germany), 2’3’-cGAMP (InvivoGen, 1ug/ml), Lipofectamine 3000 (Invitrogen), diABZI STING agonist-1 (MedChemExpress, 1μM), Sendai Virus (Cantell Strain) (Charles River, 10 HA units/ml), and HSV-1 (MOI = 1), infected as previously described [28 (link)].
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2

Neurosteroid Modulation of TLR4/TLR7 Signaling

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The selective agonists for TLR4 [lipopolysaccharide (LPS); 1 μg/ml] (Cat. #L9641, Lot # 071M4120V, Sigma-Aldrich, Saint Louis, MO, USA), and TLR7 [imiquimod (IMQ); 30 μg/ml] (Cat. #tlrl-imqs, In vivoGen, San Diego, CA, USA) were added to the cultures alone, or together with allopregnanolone (1.0 μM) or 3α,5α-THDOC (1.0 μM) or SGE-516 (1.0 μM) in DMEM (without FBS and antibiotics) 24 h before cell collection. Synthetized allopregnanolone and 3α,5α-THDOC were gifts from Dr. Purdy (62 (link), 63 ) and SGE-516 was a gift from Sage Therapeutics (54 (link)). The ligand and neurosteroid concentrations were selected based on previous findings of maximal effects (33 (link), 34 (link)). The effects of the neurosteroids on cells that were not treated with the TLR agonists were studied in parallel.
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3

TLR Agonist-Induced Immune Responses

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6- to 8-week-old C57BL/6 mice were injected (i.p.) with Poly(I:C) 200 µg (tlrl-pic-5, Invivogen, Toulouse, France), Imiquimod 20 µg (tlrl-imqs, Invivogen), CpG (class C) oligodeoxynucleotides 25 µg (ODN 2395, Invivogen), lipopolysaccharide (LPS) 10 µg (ALX-581-007, Invivogen: low doses of LPS were used to avoid endotoxemia), or physiological water. For short-term experiments, mice were injected three times every other day and sacrificed the day after the last injection. For long-term experiments, mice were injected with TLR agonists every three days throughout the experiment.
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4

Inducible NLRP Expression in Macrophages

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For doxycycline-inducible expression of NLRP constructs in immortalized mouse macrophages, we used Tet-ON retroviral system (#631188, Clontech). The different NLRP constructs (deletions or chimeras) were subcloned into pRETROX Tre3G plasmid (Clontech) using Bam HI/Eco RI and transfected using Lipofectamine 2000 into the packaging cell line Gryphon Ampho cell line (Alelle Biotechnology, ABP-RVC-10001). Nlrp3−/− immortalized mouse macrophages stably expressing the Tet-On 3G transactivator (31 (link)) were transduced with different NLRP constructs or empty vector encoding retroviruses for 2 days. Then, positive macrophages were selected with puromycin (6 μg/ml) and G418 (1.5 mg/ml). For experiments, immortalized mouse macrophages were treated for 16 hours with doxycycline (1 μg/ml; Sigma-Aldrich) and ultrapure LPS 0111:B4 (100 ng/ml; InvivoGen) and then stimulated for 1 hour with nigericin (10 μM; Sigma-Aldrich) or TcdB (1 μg/ml; BML-G150-0050, Enzo), for 6 hours with imiquimod (100 μM; tlrl-imqs, InvivoGen), or for 16 hours with MSU crystals (300 μg/ml; ALX-400-047-M002, Enzo) or with transfected lipoteichoic acid (15 μg/ml; tlrl-pslta, InvivoGen). The specific NLRP3 inhibitor MCC950 (10 μM; CP-456773, Sigma-Aldrich) or the caspase-1 inhibitor IV Ac-YVAD-AOM (100 μM; 400015, Calbiochem) was added 30 min before and during the different stimulations.
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5

Cytokine Production in B Cells and Hepatocytes

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Stimulation of Namalwa and mouse B cells was tested by the ELISA for either human IL-8 and TNFα or mouse IL-6 (both BD Biosciences), respectively, following the manufacturer’s instructions. Briefly, cells were seeded at a concentration of 3 × 106 cells in 12-well plates and were left nonstimulated or stimulated with 1 μM CpG B (human ODN 2006, mouse ODN 1826) (#10336022, Thermo Fisher Scientific; tlrl-1826, Invivogen) or 5 μg/ml Resiquimod (R848) (tlrl-r848, Invivogen) for 24 and 48 h; supernatants were collected. IL-8 cytokine production in HepG2 cells was measured by ELISA 72 h upon stimulation of cells with 8 µg/ml Imiquimod (human R837, tlrl-imqs, Invivogen) and 2 µM ODN 2006. Cells were seeded in 24-well plates, transfected separately with 0.1 µg pRK5–Myc–TRAF6 and 0.4 µg pcDNA3.1D/V5–BANK1–FL/D2/40C–V5, and stimulated the next day.
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6

Quantifying Inflammatory Cytokine Profiles

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To avoid blood contamination, under sterile conditions, 1000 μl of blood was added into each well of low adhesion 24-well plates (Corning, #3473) on ice. To prevent protein degradation, 5 μl of cell culture specific protease inhibitor (Sigma, #P1860) (ratio 1:200) was added into each well. The selective agonists for TLR4 [lipopolysaccharide (LPS); 10 μg/ml] (Cat. #L9641, Lot # 071M4120V, Sigma-Aldrich, Saint Louis, MO, USA), and TLR7 [imiquimod (IMQ); 30 μg/ml] (Cat. #tlrl-imqs, InvivoGen, San Diego, CA, USA) were added and the plates were gently transferred to cell culture incubator (37°C, 5% CO2) and incubated for 4 h. RIPA buffer (1000 μl) supplemented with protease inhibitor cocktails (ratio 1:100) (Sigma, Cat. #P8340) was added into each well (ratio 1:1) on ice and the mixtures were immediately centrifuged (9500×g; 4°C) for 5 min. Cell pellets were collected by gently removing supernatants and the supernatant residuals. RIPA buffer supplemented with protease inhibitor cocktails (100 μl) was added to the cell pellets. The mixtures were vortexed, kept on ice for 15 min, sonicated twice for 30 s at 25% output power with a Sonicator ultrasonic processor, and centrifuged (14,000×g; 4°C) for 30 min. Cell lysates were kept at −80°C until the levels of TNF-α, IL-6, and IL-1β were assessed by ELISAs.
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7

Cytokine Induction Assay for Derived DC Vaccines

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Derived media of DC vaccines as described above was used to perform a CXCL10 ELISA (R&D systems#DY466. For IFNα and β secretion, TC1 cells were treated with 1 μg/ml LPS (Invivogen# tlrl-eblps), 100 μg/ml imiquimod (Invivogen #tlrl-imqs), 10 μg/ml 5′ppp-dsRNA/lyovec (Invivogen #tlrl-3prnaclv), 2′3′ cGAMP (Invivogen #tlrl-nacga23) 25μM doxorubicin (Merck #D1515) or 100μM cisplatin (Merck #PHR1624) for 24h. An ELISA for PDL1 (R&D systems #DY1019), IFN alfa (Invivogen #luex-mifnav2) and beta (Invivogen #luex-mifnbv2) was performed according to manufacturer’s protocol.
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8

Modulation of Macrophage Responses by TLR Agonists

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Mouse macrophage/monocyte RAW264.7 cells were obtained from American Type Culture Collection (Manassas, VA, USA) and grown as previously described31 (link) and details are provided in Supplemental Information (SI) Materials and Methods. The selective agonist for TLR2 [Pam3Cys-Ser-(Lys)4 hydrochloride (Pam3Cys; 10 μg/ml)] (Cat. #506350, Sigma-Aldrich, Saint Louis, MO, USA) was added to the cultures alone, or together with 3α,5α-THP (1.0 μM) in DMEM (without FBS and antibiotics) for 30 min and cells were harvested after 24 h. Selective agonists for TLR3 [polyinosinic–polycytidylic acid potassium salt (Poly(I:C); 25 μg/ml)] (Cat. #P9582, Sigma-Aldrich) or TLR7 [imiquimod (IMQ); 3 μg/ml] (Cat. #tlrl-imqs, InvivoGen, San Diego, CA, USA) were added to the cultures alone, or together with 3α,5α-THP (1.0 μM) in DMEM (without FBS and antibiotics) 24 h before cell collection.
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9

Macrophage Cytokine Response to SARS-CoV-2 Proteins

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RAW 264.7 macrophage cell lines were seeded in a 48-well plate, and a confluent monolayer of cells was pre-treated for 2 h with 3 different lots of acAF and AF-EVs at concentrations of 25% v/v and 10% v/v, respectively, in 1 mL solutions. Following treatment, the cells were stimulated with Toll-like receptor agonists PAM3CSK4 (TLR1/2 agonist, InvivoGen, catalog # vac-pms) at 1 µg/mL, LPS (TLR4 agonist, InvivoGen, catalog # tlrl-smlps) at 100 ng/mL, and R837 (TLR7 agonist, InvivoGen, catalog # tlrl-imq) at 1 µg/mL. In another study, acAF-treated RAW 264.7 macrophages were stimulated with recombinant SARS-CoV-2 structural proteins—spike (S) at 5 µg/mL (BEI Resources, catalog #NR52397), envelope (E) at 0.5 µg/mL (ABclonal, catalog # RP01263LQ), and membrane (M) at 1 µg/mL (M, Abcam, catalog # 48951) proteins for 12 h. The collected supernatant was diluted to 1:32 followed by cytokine estimation using an ELISA. The Mouse TNF ELISA Set II (BD OptEIA, catalog # 558534) was used for performing the TNF ELISA.
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10

Bone Marrow-Derived Macrophage Activation

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Bone marrow cells were prepared from C57BL/6J mice, as previously described. In brief, bone marrow cells were differentiated into bone marrow-derived macrophages (BMDMs) for 6-7 days with DMEM/F12 medium (Hyclone, USA) supplemented with 20% L929 conditioned media and 10% heat-inactivate fetal bovine serum (FBS) (Biological Industries, Israel). The medium was replaced every 2-3 days. BMDMs were primed with 1 μg/ml LPS for 3 h in FBS free medium, with S1PR1 antagonist (W146, 3602, Tocris Bioscience, USA), S1PR2 antagonist (JTE-013, 10009458, Cayman, USA), S1PR3 antagonist (TY52156, 19119, Cayman, USA), S1PR4 antagonist (CYM 50358, 4679, Tocris Bioscience, UK), S1PR5 agonist (A971432, SML1744, Sigma-Aldrich, USA) or vehicle. After priming, BMDMs were stimulated with 3 mM ATP (A2383-5G, Sigma-Aldrich, USA), 10μM Nigericin (tlrl-nig, In vivogen, USA), 25μg/mL imiquimod (tlrl-imq, In vivogen, USA) for 30 min; 2μg/mL flagellin (tlrl-stfla, In vivogen, USA) with 2.5 μl/ml of Lipofectamine 2000, 5μg/mL dsDNA μg (tlrl-patn, In vivogen, USA) with 2.5 μl/ml of Lipofectamine 2000 for 6h. Cells were lysed for Western blot, and the supernatant was collected after stimulation.
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