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15 protocols using α sma ab5694

1

Co-culture of Endothelial and Fibroblast Cells

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To test the possibility of obtaining cell sheets made of more than one cell population, MS1 (endothelial cells) and NIH-GFP+ (fibroblasts) cells were seeded onto 3D-printed supports filled with both MC-Na005 and MC-PBS20 hydrogels. Cells were seeded in a 50:50 ratio (1.5 × 105 cells/support) and cultivated for 48 h. Co-cultured cell sheets were then detached by lowering the temperature as described above (Section 2.6.2), collected, and stained with an anti-alpha smooth muscle actin antibody (α-SMA, ab5694, from Abcam, Cambridge, UK) specific for endothelial cell cytoskeleton. Lastly, detached co-cultured cell sheets were co-stained with DAPI and images were collected using a fluorescence microscope (Leica DM5500 B).
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2

Western Blot Analysis of Protein Expression

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Western blot analysis was performed as described in an earlier study [3 (link)]. Briefly, 50 μg of total cell protein lysate were separated by 10% SDS–polyacrylamide gel electrophoresis (SDS-PAGE) and transferred to polyvinylidene fluoride (PVDF) membranes. The following antibodies were used: DNMT3B (832121, mouse monoclonal antibody, 1:1000, NOVUS Biologicals), TCF12 (Sc-357, rabbit polyclonal antibody, 1:200, Santa Cruz), α-SMA (ab5694, rabbit polyclonal antibody, 1:1000, Abcam), c-Myc (D84C12, rabbit polyclonal antibody, 1:1000, #5605), Cyclin D1 (D86, rabbit polyclonal antibody, 1:500, BioWorld), p-ATM (2873, rabbit monoclonal antibody, 1:1000, Cell Signaling Technology Co), p-RB (BS6414, rabbit polyclonal antibody, 1:500, Bioworld), and α-actin (1:1000, Boster).
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3

Liver Histological Analysis for Fibrosis

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Liver specimens were fixed in 10% neutral buffered formalin, embedded in paraffin, and cut into 4 μm sections and placed on glass slides. To examine hepatic morphology and assess liver fibrosis, liver sections were deparaffinized, rehydrated, and stained via the usual method with standard hematoxylin and eosin staining (H&E) and Sirius red staining as previously described [16 (link),25 (link)]. For immunohistochemical staining, liver sections were deparaffinized, rehydrated, and then incubated for 10 min in 3% hydrogen peroxide to block endogenous peroxidase. Antigen retrieval was performed by heating in 10 mM sodium citrate buffer (pH 6.0). Sections were blocked in DAKO protein block (X9090; DAKO, Carpinteria, CA, USA) for 30 min and incubated with primary antibodies at 4 °C overnight. The following primary antibodies were used: Tβ4 (A9520; diluted 1:8000; Immundiagnostik AG, Bensheim, Germany) and α-Sma (ab5694; diluted 1:1000; Abcam, Cambridge, MA, USA). Polymer horseradish peroxidase (HRP)-conjugated anti-rabbit secondary antibody (K4003; DAKO, Carpinteria, CA, USA) was used as secondary antibody. 3,3′-Diaminobenzidine (DAB) (K3466; DAKO, Carpinteria, CA, USA) was employed for the detection procedure.
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4

Multicolor Immunofluorescence Staining of Tissue

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Frozen samples, processed immediately after tissue harvesting, were cut in a Leica CM1900 cryostat. For staining, tissues were fixed in ice-cold acetone:methanol (50:50) and antibodies were prepared in antibody diluent (003118; Invitrogen-Thermo Fisher Scientific, Paisley, UK). After staining, slides were mounted in Fluoroshield with 4′,6-diamidino-2-phenylindole (DAPI;F6057; Sigma, St Louis, MO, USA). Primary antibodies used were CD146-FITC (MCA2141F; AbD Serotec-BioRad, Kidlington, UK), CD144 (AHP628Z; AbD Serotec-BioRad), NG2 (MAB2585; R&D Systems, Minneapolis, MN, USA), αSMA (ab5694; AbCam, Cambridge, UK), CD29 (303015; BioLegend, San Diego, CA, USA), CD44 (AbD Serotec-BioRad), and CD34 (21270341S; ImmunoTools, Friesoythe, Germany). Isotype controls were IgG1-FITC (MCA928F; AbD Serotec-BioRad), IgG1 (MAB002; R&D Systems), IgG1κ (400101; BioLegend), and IgG1 (21335011; ImmunoTools), all raised in mouse; and rabbit IgG (PRABP01; AbD Serotec-BioRad). Secondary antibodies were conjugated to AF488 (A11029), AF568 (A110037), and AF568 (A10042), all from Invitrogen-Thermo Fisher Scientific. Micrographs were produced using a Zeiss LSM710 confocal or Leica DMLB fluorescent microscope.
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5

Western Blot Analysis of HSCs Treated with Bioactive Compounds

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HSCs were treated with 27 μM nortriptyline, 75 μM of B13, 25 μM of ceramide-C6, or ethanol vehicle for 48 hours and then washed in ice-cold dPBS and harvested in 100 ul of RIPA Buffer (Boston BioProducts) containing protease and phosphatase inhibitors (Sigma). Cellular lysates (30 mg) were prepared in Laemmli’s sample buffer (Boston BioProducts), separated by electrophoresis on a 12% polyacrylamide gel, and transferred to a polyvinylidene difluoride membrane (Millipore). Membranes were blocked with Tris-buffered saline 0.05% Tween 20 (TBS/T) containing 5% non-fat dry milk. Membranes were incubated with primary antibodies overnight at 4 °C and with secondary antibodies conjugated to horseradish peroxidase (HRP) (Cell Signaling Technology) for 1 hour at room temperature. Membranes were then washed three times with TBS/T. Immunoreactive bands were visualized on a C-Digit blot scanner (Li-Cor Biosciences) with a chemiluminescent HRP substrate (GE Healthcare). The following antibodies were used: αSMA (ab5694) and beta actin (ab8227) (Abcam).
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6

Cigarette Smoke Extract Exposure in iHBECs

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Immortalised human bronchial epithelial cells (iHBECs; courtesy Dr Shay, University of Texas) were used for cigarette smoke extract (CSE) experiments. iHBECs were cultured in keratinocyte-serum free medium (K-SFM; Gibco, UK) supplemented with 25μg/ml bovine pituitary extract (Gibco, UK), 0.2ng/ml epidermal growth factor (Gibco, UK), 25μg/ml G418 sulphate (VWR Life Science, UK) and 250ng/ml puromycin (MilliporeSigma, UK). ELK1 #ab32106, β-tubulin #ab6046, GAPDH #ab181602, αSMA #ab5694 and NIMP #ab2557 antibodies for western blotting and/or immunohistochemistry (IHC) were from Abcam, UK. CD3+ #MCA1477 and CD68 #OABB00472 antibodies for IHC were obtained from Bio-rad, UK and Aviva Systems Biology, UK, respectively. Reagents required for the synthesis of cDNA from RNA, were supplied from Invitrogen, UK (SuperScript IV Reverse Transcriptase), Qiagen, UK (Nuclease free water), Roche, UK (OligoDT) or Promega, UK (RNasin inhibitor, dNTPs). Tobacco laboratory research grade cigarettes (batch 1R6F) were from the University of Kentucky, USA.
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7

Comprehensive Western Blot Analysis Protocol

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Western blot analysis was performed as described in a previous report from ours [16 (link)]. Primary antibodies used in this study are as follows: PPARγ (ab209350) (1 : 1,500), α-SMA (ab5694), desmin (ab15200), AKT (ab8805), Phospho-AKT (ab81283), PI3K p110β (ab151549), PDE5 (ab14672) (1 : 1,000; ABcam, USA), and PI3K p110α (#4249) (1 : 1,200; Cell Signaling Technology, USA). The primary antibody of GAPDH was diluted at 1 : 1,000–1,500 (Santa Cruz, USA). The secondary HRP-conjugated antibodies were diluted at 1 : 2,500. The blots were detected using the ECL system (Beyotime Biotechnology, China). A LI-COR Odyssey scanner (LICOR) was used to analyze the intensity of bands on the blots.
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8

Protein Isolation and Western Blot Analysis

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Isolation of total protein from cultured cells was performed by using lysis buffer supplemented with protease and phosphatase inhibitors. The protein concentration was measured by protein assay (BioRad, Hercules, CA, USA), and all samples were normalized to 30 μg. Cellular proteins were separated by SDS-PAGE and transferred onto polyvinylidene difluoride (PVDF) membranes. Primary and secondary antibodies were used to label the target on the membrane. The α-SMA (ab5694) and BAMBI (ab57043) antibody used in this study were purchased from Abcam (Cambridge, MA, USA). The following antibodies were purchased from Cell Signaling (Beverly, MA, USA): T/p (Ser465/467; Ser423/425)-smad2/3 (#8685, #8828), T/p (Ser536)-p65 (#8242, #3033), T/p (Ser176/180)-IKKα/β (#11930, #8943, #2697), T/p (Ser32)-IκBα (#4814, #2859), T/p (Thr202/Tyr204)-ERK (#4695, #9101), T/p (Thr183/Tyr185467)-JNK (#9252, #4668), and T/p (Thr180/Tyr182)-p38 (#8690, #4511). The immunoblotting signals were normalized to α-tubulin (T9026) (Sigma-Aldrich, St Louis, MO, USA). The bands were visualized using an ECL detection reagent (Millipore Corporation, Billerica, MA, USA).
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9

Histological Analysis of Adipose, Liver, and Pancreatic Tissues

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Adipose, liver and pancreatic tissues were fixed in 10% neutral buffered formalin solution and paraffin-embedded. 5 μm-thick sections were used for hematoxylin–eosin (H&E) analysis, oil red O dye detection, periodic acid schiff (PAS) analysis (Beijing Solarbio life science), and Sirius red (Beijing Solarbio life science) analysis. α-SMA (ab5694, abcam) antibody was used for immunofluorescence using the ABC method (Vector Laboratories).
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10

Western Blot Analysis of Kidney Proteins

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Mouse kidneys were homogenized in SDS Laemmli buffer and loaded onto 10% SDS-polyacrylamide agarose electrophoresis gels essentially as described previously [27 (link), 47 (link)]. Primary antibodies pERK1/2 (9101 S), pAKT (4060 S), pSTAT3 (9145 S), STAT3 (9139 S), cyclinD1 (2978 S), S6 (2317 S), pS6 (4858 S), PDGFRβ (3169), VEGFR2 (9698), and FGFR1 (9740) from Cell signaling (Danvers, MA, USA); YAP (SC-101199), GAPDH (SC-32233), ERK1/2 (SC-94), cMyc (SC-40) from Santa Cruz Biotechnology, Inc. (Dallas, TX, USA), and α-SMA (ab5694; Abcam, Cambridge, MA, USA); and secondary antibodies, anti-mouse (P0447) and anti-rabbit (P0448) from Dako (Santa Clara, CA, USA) and ECL reagent from Amersham (GE Health care, Buckinghamshire, UK) were used.
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