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7 protocols using serca2

1

Comprehensive Protein Detection Techniques

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For immunoblotting and co-immunoprecipitation: Actin (Santa Cruz, ♯sc-47778; 1:5000), ATF6 (Cell Signaling Technology, ♯65880; 1:1000), BCL-2 (AbCam, ♯ab182858; 1:500), BCL-XL (Cell Signaling Technology, ♯2764; 1:1000), Cleaved-Caspase-8 (Cell Signaling Technology, ♯8592; 1:1000), Caspase-3 (Cell Signaling Technology, ♯9665; 1:1000), Caspase-9 (Cell Signaling Technology, ♯9508; 1:1000), CHOP (Cell Signaling Technology, ♯2895; 1:250), GFP (AbCam, ♯ab13970; 1:2000), GRP78 (Cell Signaling Technology, ♯3177; 1:1000), FLAG-HRP (Sigma Aldrich, ♯A8592; 1:4000), HA-HRP (Roche, ♯11867423001; 1:2000), IP3R1 (Thermo Fischer, ♯PA1-901; 1:1000), IP3R1 & IP3R2 [previously described77 ; 1:1000], IP3R3 (BD Biosciences, ♯610312; 1:1000), KDEL (AbCam, ♯ab12223; 1:2000), MCL-1 (Cell Signaling Technology, ♯5453; 1:1000), Nicastrin (BD Biosciences, ♯612290; 1:1000), PARP (Cell Signaling Technology, ♯9542; 1:1000), SERCA2 (Cell Signaling Technology, ♯4388; 1:1000), STIM1 (Cell Signaling Technology, ♯5668; 1:1000).
For immunofluorescence: DAPI (Thermo Fischer, ♯D1306; 1 µg/ml), HA (Cell Signaling Technology, ♯3724; 1:500), BAP31 (Enzo Life Sciences, ♯ALX-804-601-C100; 1:250).
For proximity ligation assay: HA (Cell Signaling Technology, ♯3724; 1:500), HA (Enzo Life Sciences, ♯ENZ-ABS118-0200; 1:200), IP3R1 (Thermo Fischer, ♯PA1-901; 1:200), IP3R3 (BD Biosciences, ♯610312; 1:200).
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2

Western Blot Analysis of Cardiac Proteins

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Western blot analysis was performed as we described previously [39 (link)–42 (link)]. Protein samples of the cardiomyocytes and fibroblasts isolated from the mouse hearts were prepared in RIPA lysis buffer. 30μg of total proteins were resolved by SDS-PAGE and transferred to a nitrocellulose membrane (Bio-Rad). Then the membranes were incubated overnight (4°C) with a primary antibody against AC4 (Sigma, SAB4300752, 1:1000), PKA (Cell Signaling, #5842, 1:1000), P-PKA (Cell Signaling, #5661, 1:1000), PLN (Cell Signaling, #14562, 1:1000), P-PLN (Cell Signaling, #8496, 1:1000), SERCA2 (Cell Signaling, #9580, 1:1000), Cleaved-caspase 3 (Cell Signaling, #9661, 1:1000), Epac1 (Abcam, ab109415, 1:1000), GAPDH (Santa Cruz, sc-32233, 1:1000). Goat anti-mouse or goat anti-rabbit horseradish peroxidase (1:2000–1:5,000; Santa Cruz Biotechnology) was used as a secondary antibody and incubated for 1 hour at room temperature. Specific proteins were detected by chemiluminescent methods using Clarity western ECL substrate (Bio-Rad, Hercules, CA). Protein abundance on western blots was quantified by densitometry using Image lab software (Bio-Rad, Hercules, CA).
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3

Cardiac Protein Interaction Profiling

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Pull-down assays were performed as previously described [25 (link),56 (link)]. Briefly, wild-type mouse cardiac homogenates were prepared in 10 mM NaPO4 (pH 7.2), 2 mM EDTA, 10 mM NaN3, 120 mM NaCl, and 1% NP-40, supplemented with protease inhibitors (Sigma-Aldrich, Munich, Germany). Equivalent amounts of recombinant GST-PLN-WT and GST-PLN-R14del recombinant proteins were mixed with 0.5 mg of mouse cardiac homogenates at 4 °C for 16 h. The beads were washed with 10 mM NaPO4 (pH 7.2), 10 mM NaN3, 120 mM NaCl, and 0.1% (v/v) Tween-20 and were subsequently analyzed by Western blot with the following primary antibodies: SERCA2, Hsp90 (Cell Signaling Technology, Leiden, The Netherlands), HAX-1 (BD Biosciences, Erembodegem, Belgium), PP1, GM (Santa Cruz Biotechnology, Heidelberg, Germany), Hsp20, I-1 (AbCam, Cambridge, UK), HRC (Sigma-Aldrich, Munich, Germany), and peroxidase-conjugated goat anti-rabbit (GE Healthcare Life Sciences, Buckinghamshire, UK) or anti-mouse (Sigma-Aldrich, Munich, Germany) secondary antibodies. Immunoreactive bands were detected using Pierce ECL Plus reagents (ThermoFisher Scientific, Waltham, MA, USA). Protein quantification was performed using ImageJ [57 (link)].
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4

Immunoprecipitation Protocol for Transfected HEK 293 Cells

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Immunoprecipitation experiments in transiently transfected HEK 293 cells were performed as previously described [30 (link),47 (link)]. Briefly, forty-eight hours after transfection, cells were lysed in 50 mM Tris HCl, 150 mM NaCl, and 1% NP40 supplemented with protease inhibitors. Pre-cleared protein extracts were incubated overnight on a rotary wheel at 4 °C with the GFP antibody (Sigma-Aldrich, Munich, Germany, Erembodegem, Belgium) and protein-A/G agarose beads (Santa Cruz Biotechnology, Heidelberg, Germany). Immunoprecipitates were collected by a 5 min spin at 2000 rpm, washed three times in PBS, and analyzed by Western blot analysis using SERCA2 (Cell Signaling Technology, Leiden, The Netherlands) or GFP (Sigma-Aldrich, Munich, Germany) antibodies.
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5

Protein Expression Detection Methods

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Expression of proteins were detected using antibodies against mouse lamin A/C (SAB4200236, Sigma‐Aldrich, St. Louis, MO, USA), human lamin A (MAB3540, Millipore, Burlington, MA, USA), Sarcolipin (ABT13, Millipore), β‐tubulin (ab179513, Abcam, Cambridge, UK), FLAG (F7425, Sigma‐Aldrich), HA (H6908, Sigma‐Aldrich), lamin B1 (ab133741, Abcam), lamin B (sc‐6217, Santa Cruz, Dallas, TX, USA), Calnexin (MAB3126, Millipore), Calreticulin (PA3‐900, Thermo Fisher Scientific), SERCA2 (4388, Cell Signaling, Danvers, MA, USA), β‐ACTIN (A5441, Sigma‐Aldrich), Grp78 (ab108613, Abcam), Chop (2891, Cell Signaling), eIF2α (2103, Cell Signaling), phospho‐eIF2α (3398, Cell Signaling), Atf4 (SC‐200, Santa Cruz), IRE1α (3294, Cell Signaling), phospho‐IRE1α (PA1‐16927, Thermo Fisher Scientific), and Gapdh (GTX100118, GeneTex, Hsinchu, Taiwan).
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6

TMEM203 Regulation of NFAT2 Signaling

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TMEM203; D1ER, NFAT2 (1–402) were synthesized and cloned into desired plasmids by Genscript USA Inc. pTUNE-TMEM203, RFP-fused organelle markers were purchased from OriGene Technologies Inc. Various antibodies were purchased from respective companies as mentioned—STIM1 (Cat # 4916) and SERCA2 (Cat # 4388) from Cell signaling technologies. IP3R antibody (# 610312) from BD Bioscience, INSIG1 (Cat #ab70781) from Abcam and M2 FLAG from Sigma Aldrich. siRNA against Human TMEM203 were from Qiagen—siRNA TMEM203—CAGGCACTGCTTGGCTTACTA (Cat #-SI00633185); control siRNA were purchased from Dharmacon-Thermo Scientific—Non-Targeting siRNA #1(Cat #-D-001210-01-05).
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7

Cardiac Calcium Signaling Pathway Analysis

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Caffeine was obtained from Sigma. Phospho-RyR2 (S2809) (1:1000), phospho-SERCA2 (S38) were obtained from Badrilla. RyR2 (1:1000), SERCA2 (1:1000), phospho-PLN (1:1000), and PLN (1:1000) antibodies were obtained from Cell Signaling Technology. PI3Kγ (1:1000) and PP1 (1:1000) antibodies were from Santacruz Biotechnology. PP2Ac (1:2000) antibody was obtained from Millipore. Okadaic Acid was obtained from Sigma.
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