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Triton x 100

Manufactured by GE Healthcare
Sourced in United States, Germany, Sweden, United Kingdom

Triton X-100 is a non-ionic detergent commonly used in biochemical applications. It is a polyethylene glycol tert-octylphenyl ether that functions as a surfactant, solubilizing and disrupting cell membranes. Triton X-100 is used for protein extraction, cell lysis, and other laboratory procedures that require the solubilization of hydrophobic compounds.

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14 protocols using triton x 100

1

Myofibrillar Protein Analysis via IEF

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ID-IEF using slab gel electrophoresis was performed on 10 µg of total myofibrillar protein as previously described with modification [18 ]. Briefly, IEF gel slabs (0.75 mm thick) containing 5% acrylamide/bis (37.5:1, Biorad, Hercules, CA), 9.1 M urea, 2% (w/v) Triton X-100, and 0.05× of Pharmalyte 4.2–4.9 (GE Healthcare, Chicago, IL), with the catalysts ammonium persulfate and N,N,N,N-tetramethylethylenediamine (TEMED) added separately. Myofibrillar protein samples were prepared in IEF solubilization buffer containing 9.2 M urea (Biorad, Hercules, CA), 2% Triton X-100, 0.02× of Pharmalyte 4.2–4.9, Tributyl Phosphine (Biorad, Hercules, CA) and 0.01% Bromophenol Blue (w/v). Electrophoresis was performed using 40 mM lysine as the cathode buffer and 7 mM phosphoric acid as the anode buffer. The gel was transferred in 0.7% acetic acid (pH 3) in preparation for western blotting.
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2

Extraction and Analysis of Ladanifer Cistus LA

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The LA extract was obtained from twigs of Cistus ladanifer as previously described (i.e., crude acidic fraction of which ≈16% is LA) (Frija et al., 2013 (link)). Chemicals were purchased from Sigma Aldrich (USA), except electrophoresis reagents such as dithiothreitol (DTT), Triton X-100, 3-[(3-cholamidopropyl) dimethylammonio]-1-propanesulfonate (CHAPS) and IPG buffers that were from GE Healthcare (Sweden). All solvents used were of the highest analytical grade and water was obtained from a Milli-Q system (Millipore).
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3

Metabolite and Enzyme Analysis in Mucosa

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For the analyses of metabolites and enzyme activities, 30 mg of powdered mucosa tissue was homogenized in 300 µl lysis puffer containing 10 mM HEPES (Thermo Fisher Scientific, Schwerte, Germany), 1% (v/v) Tween20 (Carl Roth, Karlsruhe, Germany), 1 mM EDTA (GE Healthcare, Munich, Germany), 10 mM NaF (Thermo Fisher Scientific), 0.1% (v/v) Triton X-100 (GE Healthcare), 0.5% (v/v) DOC (Sigma-Aldrich), 0.1% (w/v) SDS (USB Corporation, Cleveland, OH, USA) with 0.5 cycles and 80% amplitude (20-times) Ultrasonic Processor UP50H (Hielscher Ultrasound Technology, Teltow, Germany)54 (link). The homogenized extract was centrifuged at 3000×g for 20 min at 4 °C. The supernatant was used to measure glucose and lactate concentrations and aspartate aminotransferase (AST) and glutamate dehydrogenase (GLDH) activities photometrically (Abx Pentra 400; Horiba, Kyoto, Japan) using kits for glucose (no. A11A01667, Axon Lab, Reichenbach, Germany), lactate (no. A11A01721, Axon Lab), AST activity (no. A11A01629, Axon Lab) and GLDH activity (LT-GD 0010, Labor + Technik Eberhard Lehmann GmbH, Berlin, Germany). Protein concentrations of the extracts were measured using the Bradford kit (Thermo Fisher Scientific). Metabolites and enzyme activities were normalized to the protein concentration of the mucosa extract.
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4

Transformation and Characterization of T. reesei Mutants

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The transformation of the T. reesei WT was performed as described by Gruber and coworkers [23 (link)]. A total of 20 μg of linear DNA from the deletion cassette was used in the assay. After transformation, the plates were incubated at 30 °C for 3 to 4 days until spores were visible. The candidates were submitted to three rounds of selection on MA medium with and without 0.1% Triton X-100 (GE Healthcare, Uppsala, Sweden). Cassette integration in the genome locus was verified by PCR using a specific set of primers for pyr4 and epl2 (Table S2). The expression profile of the epl2 gene was also analyzed by RT-qPCR (Table S3).
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5

Visualizing Laser-Induced Choroidal Neovascularization

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After euthanasia on day 1, 3, 7, or 14 following laser photocoagulation, the eyes were enucleated and prefixed with 4% paraformaldehyde (Nacalai tesque, Kyoto, Japan) for 30 min. Retina-RPE-choroid complexes were microsurgically isolated from the prefixed eyes and further fixed with 4% paraformaldehyde for 1 h. The retina was removed from RPE-choroid complexes. The RPE-choroid complexes were then washed with PBS (1X; 137 mM NaCl, 2.7 mM KCl, 8.1 mM Na2HPO4, 1.5 mM KH2PO4:Nacalai tesque) and incubated for 30 min with PBS blocking buffer containing 0.5% Triton X-100 (GE Healthcare UK, Buckinghamshire, UK) and 1% bovine serum albumin (BSA; Sigma-Aldrich, St. Louis, MO). To visualize neovascularization, RPE-choroid complexes were incubated overnight at 4 °C with 0.01% fluorescein isothiocyanate (FITC)-conjugated isolectin B4 derived from Griffonia (Bandeiraea) simplicifolia agglutinin (Vector Laboratories, Peterborough, UK) diluted with PBS containing 0.5% Triton X-100. After the RPE-choroid complexes were washed with PBS and sealed with VECTASHIELD (Vector Laboratories), CNV was observed with a fluorescence microscope (IX71; Olympus, Tokyo, Japan). Note that FITC-labeled isolectin binds to microglial cells and macrophages as well as endothelial vascular cells [19 (link)].
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6

Immunohistochemical Staining Procedure

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Mice of the genotypes to be compared in a given experiment were always incubated in parallel using the same solutions and conditions. All incubations were performed in 5% normal goat serum (Invitrogen, Carlsbad, CA) in PBS at 4°C, pH 7.4, in the presence of 2 mM sodium orthovanadate. Floating sections were incubated for one hour in 0.5% Triton-X100 (GE Healthcare, Chalfont St. Giles, UK) for permeabilization, followed by primary antibody solutions for 36 hours. Six hour incubations with Alexa Fluor 555 goat anti-rabbit (1:1000; Invitrogen, Cat# A-21429, RRID:AB_141761) and, for experiments involving colocalization, Alexa Fluor 488 or 633 goat-anti-mouse secondary antibodies (1:500; Invitrogen, Cat# A-11029, RRID:AB_138404 and Cat# A-21052, RRID:AB_141459) then occurred. For each animal, sections not incubated with primary antibody were run in parallel as a negative control. Sections were wet-mounted on Superfrost Plus slides (Erie Scientific, Portsmouth, NH), allowed to dry onto the slides, and incubated in serial dehydration solutions for two minutes each of 50%, 70%, 85%, 95%, 100%, and 100% ethanol, followed by a 20 minute incubation in xylene (VWR, Radnor, PA) and coverslipping.
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7

Quantitative Proteomics via iTRAQ

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Triton X-100 was purchased from GE Healthcare (Waukesha, WI, USA). Triethylammonium bicarbonate buffer was acquired from Sigma-Aldrich (Merck Millipore, Darmstadt, Germany). ZipTip Pipette Tips and Milli-Q water were obtained from EMD Millipore (Billerica, MA, USA). The iTRAQ Reagent-8 Plex Multiplex kit was acquired from Applied Biosystems (Thermo Fisher Scientific, Inc., Waltham, MA, USA) and Strata-X 33 Polymeric Reversed Phase was purchased from Phenomenex (Los Angeles, CA, USA). All other reagents were acquired from commercial sources.
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8

Protein Extraction for Maturation Analysis

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Protein extracts were prepared in biological triplicate (300 mg FM) for each maturation treatment. Soluble proteins were extracted according to the method described by Santa-Catarina et al. [110 ]. The buffer-soluble proteins were extracted with phosphate buffer (pH 7.5) containing 50 mM sodium phosphate dibasic (Vetec), 10 mM 2-mercaptoethanol (Sigma-Aldrich) and 1 mM phenylmethylsulfonyl fluoride (PMSF) (Sigma-Aldrich). The supernatants were transferred to clear microtubes, and the proteins were precipitated on ice for 30 min with 10% trichloroacetic acid (Merck). The pellet was washed three times with cold acetone (Merck), and the proteins were then resuspended and concentrated in 0.5 mL of a urea/thiourea buffer (7 M urea, 2 M thiourea, 1% dithiothreitol (DTT), 2% Triton X-100, 0.5% pharmalyte (all from GE Healthcare, Freiburg, Germany) and 1 mM PMSF), to which a 0.5% immobilized pH gradient (IPG) buffer (pH 4–7) (GE Healthcare) was added. The protein concentration was determined using the 2-D Quant Kit (GE Healthcare).
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9

Purification of Rat MGST1 Protein

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The purification procedure is similar as in47 (link) with the following modifications: 1) The membrane fraction was solubilized by addition of an equal volume of: 10 mM sodium phosphate (NaPi) at pH 8, 10% glycerol, 0.1 mM EDTA, 1 mM GSH, and 6% Triton X-100 (Sigma) and followed by 45 minutes incubation in 4 °C; 2) The hydroxyapatite affinity chromatography was replaced by immobilized metal ion affinity chromatography (IMAC), (column: Hitrap chelating, from GE healthcare). The unspecific proteins were washed in 10 mM NaPi at pH 8, 150 mM NaCl, 1 mM GSH, 10% glycerol, 50 mM imidazole, and 0.1% reduced Triton X-100 (Sigma) and rat MGST1 protein was eluted in 350 mM imidazole; 3) After IMAC, the eluted peak was immediately desalted (column: HiPrep 26/10, from GE healthcare) in buffer A: 10 mM NaPi at pH 8, 30 mM NaCl, 1 mM GSH, 10% glycerol, and 0.1% reduced Triton X-100. The desalted sample was further purified by cation exchange chromatography (column: Hitrap SP, from GE healthcare) equilibrated with buffer A. Rat MGST1 protein was eluted with 300 mM NaCl in buffer A. The pooled fractions (approximate 6 ml) were concentrated (approximate 0.6 ml) (centrifugal tube: Amicon Ultra-4 centrifugal filter unit with 10 kDa cutoff, from Millipore) and followed by 2D crystallization trials. The activity measurement was performed according to49 (link).
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10

Characterization of Tunisian Cork Oak Forest Soils

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Chemicals: If not explicitly stated otherwise, chemicals were of analytical grade and purchased from Sigma Aldrich. trans-Acetylacrylate (Alfa Aesar), malt extract agar (MEA) (HiMedia), dichloran-glycerol (DG18) agar (Oxoid) and triton X-100 (GE Healthcare) were also used. All Liquid Chromatography (LC) and Mass Spectrometry (MS) solvents, as well as those required in the fast-solvent extractions, were of the highest analytical grade. Chlorinated derivatives of resorcinol, hydroquinone and catechol were produced through an aqueous chlorination methodology (Heasley et al., 1989 ) and 2,3,5,6-tetrachloro-4-methoxyphenol (drosophilin A) was synthesised as described before (Hiebl et al., 2011) .
Collection and physicochemical-characterisation of soil samples: Soil samples were collected in three Tunisian demarked cork oak forests, namely Aîn Hamraia (AH), Fej Errih (FER) and Ras Rajel (RR) in February 2009, as previously described (McLellan et al., 2013) . In brief, three locations were chosen within each forest and a composite sample was collected from five sub-samples (0 -20 cm), sieved to < 2 mm in the field, and immediately conserved (dark, 4 ºC) until analysis. Total organic carbon content, total nitrogen
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