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Coomassie staining

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Coomassie staining is a common laboratory technique used to detect and quantify proteins in various applications, such as gel electrophoresis and Western blotting. It involves the use of a dye, Coomassie Brilliant Blue, which binds to proteins and produces a visible blue color. This method allows for the visualization and analysis of protein samples.

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7 protocols using coomassie staining

1

Heterologous Expression and Purification of Rv2466c

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WT rv2466c was introduced into pET28B (Novagen),
and the resulting plasmid was transformed into BL21(DE3) competent
cells (Life technologies) with kanamycin selection (50 μg/mL).
Bacteria were grown initially at 37 °C while shaking, and protein
expression was induced using 0.75 mM IPTG at 16 °C for 18 h.
Cells were pelleted and lysed using a sonicator and His tagged protein
was purified with nickel chromatography and dialyzed into a 50 mM
Tris, pH 7.5, 50 mM NaCl solution. On some occasions, protein was
further purified by FPLC. Protein concentration was measured using
a BCA kit (Thermofisher). Purity and size of the protein was confirmed
using SDS-PAGE gel and Coomassie staining (Biorad) (Figure S8). Mutant proteins were constructed by introduction
of point mutations into the pET28B plasmid that contains the WT rv2466c using the Quick Change II site directed mutagenesis
kit (Agilent). For expression in mycobacteria, rv2466c was cloned into pMV261 (for episomal expression) or pMV306 (genomic
expression) plasmids under the control of the hsp60 promoter for constitutive
expression and selected by kanamycin.
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2

SDS-PAGE Protein Separation and Mass Spectrometry

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Proteins (30 µg) were separated by SDS-PAGE and visualized with Coomassie staining (Bio-Rad). Gel lanes were excised into sections (10 for each lane) and subjected to in-gel reduction, alkylation and trypsination as described previously with modifications43 (link),44 (link),47 . Briefly, proteins in the gel sections were reduced with 10 mM DTT (Bio-Rad) for 30 min at 55 °C, alkylated for 30 min with 25 mM iodoacetamide (Sigma), and then digested overnight at 37 °C with 750 ng of sequencing grade trypsin (Promega). Digestion products were extracted with 50% (v/v) acetonitrile and 0.1% trifluoroacetic acid and were then analysed by liquid chromatography-mass spectrometry (LC-MS/MS).
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3

Aflibercept Molecular Analysis by SDS-PAGE

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Aliquots of 1 µg of aflibercept collected from prefilled syringes were mixed with distilled water and LDS sample buffer (Novex) with or without DL-dithiothreitol solution (Sigma-Aldrich). Samples containing DL-dithiothreitol were incubated for 5 min. at 95 °C before being applied onto 12% Bis-Tris Plus gel (Invitrogen) and run at 200 V for 22 min. Spectra™ Multicolor Broad Range Protein Ladder (ThermoFisher) was used for molecular size comparisons, and the protein bands were visualized by Coomassie staining (Bio-Rad).
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4

SARS-CoV-2 Spike Protein Expression Analysis

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The 293 T/ACE2 and 293 T cells were transfected with CMV-Luc-IRES-EGFP-SV40 and pCDNA3.1-SARS-S or pCDNA3.1-SARS2-S plasmids for cell–cell fusion, harvested, and lysed on ice in RIPA lysis buffer (Boston BioProducts, Ashland, MA) in the presence of cOmplete Protease Inhibitor Cocktail (Sigma-Aldrich, St. Louis, MO). The protein concentrations were measured by Coomassie staining (Bio-Rad). Proteins were separated by 10% SDS-PAGE, transferred to nitrocellulose membranes, which were blocked with 5% non-fat milk, 0.1% Tween-20 in Tris-buffered saline (TBS) and incubated with anti-Myc antibody (Cell Signaling, Danvers, MA), anti-C9 antibody (Bionova, Freemont, CA) (Cell Signaling), or anti-SARS-CoV-2 S RBD antibody (Cell Signaling). After washing, the membranes were incubated with horseradish peroxide (HRP)-conjugated secondary antibodies (Cell Signaling), and the proteins were detected using Amersham ECL Prime Western Blotting Detection Reagent (GE Healthcare BioSciences, Pittsburgh, PA). Protein bands were captured by Chemi Doc MP Imaging System. The membranes were stripped and re-probed with an anti-actin antibody (Cell Signaling) for a loading control.
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5

Characterizing CARD9-BCL10 Complex Formation

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Purified CARDs from CARD9 and BCL10 were incubated together for 1 h at room temperature. Following incubation, the mixture was concentrated to 10–15 mg/ml using a concentrator. The concentrated protein mixture was applied to a Superdex 200 10/300 gel filtration column, that had been pre-equilibrated under specific buffer conditions. ACTA_FPLC (GE Healthcare Life Sciences), was used for chromatography. Complex assembly was evaluated based on the positions of the eluted peaks, monitored at a wavelength of 280 nm and followed by 15% SDS-PAGE, visualized by coomassie staining (Bio-Rad Laboratories, Inc.).
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6

SDS-PAGE Analysis of Recombinant Human Albumin

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SDS-PAGE was performed under both reducing and non-reducing conditions. The rHA samples were mixed with 2× Laemmli buffer (Bio-Rad, 161–0737), and approximately 4-5 μgs of rHA was loaded per lane. For reducing conditions, a final concentration of 100 mM DTT was added to the Laemmli-rHA solution using a 500 mM DTT stock (Pierce, product# 20291, lot# ND170603) and incubated in a 100°C heat block for 3–5 min prior to loading on to the gel. Non-reduced and reduced samples were separated using either 3-8% Tris-Acetate gels (Life Technologies, EA03752BOX) and Tris-Acetate SDS Running Buffer (Invitrogen, LA0041) or 4-12% NuPAGE Bis-Tris Gels (Cat# NP0323, Life Technologies Corporation, Carlsbad, CA) and 1× MES Running Buffer (50 mM MES, 50 mM Tris, 0.1% sodium dodecyl sulfate, 1 mM EDTA pH 7.3) at 150 volts for 1 hour. Protein bands were visualized by Coomassie staining (Bio-Rad, 161–0787). Gels were stained for 1 hour followed by a water wash until protein bands developed. Alternatively, purity and trypsin resistance gels were stained for 1 hour in 0.1% Brilliant Blue R, 7.7 M reagent alcohol, 1.75 M glacial acetic acid, and de-stained in 10% acetic acid. Gels were scanned using Gel Logic 212 Pro Imaging System, and densitometry was performed using the Carestream Molecular Imaging software (Carestream Health, Incorporated, New Haven, CT).
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7

Hec1B and ARK2 Cell Invasion Assay

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Hec1B and ARK2 cells (1 × 105) were plated into Fluorimetric Invasion Assay (FIA) chambers (Corning, NY). The outer compartment contained FBS or 50 ng/mL HB-EGF as a chemoattractant. The plate was incubated for 48hrs letting cells invade the Matrigel layer and reach the surface membrane. Cells were fixed and stained with Coomassie Staining (BioRad, CA) and counted per well in replicates of three. EC cell invasion was assessed in the absence and presence of PG545.
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