The largest database of trusted experimental protocols

5 protocols using 100 mm petri dishes

1

Caco-2 Cell Histone Analysis Protocol

Check if the same lab product or an alternative is used in the 5 most similar protocols
Caco2 cells were cultured in 100-mm Petri dishes (Sarstedt) in DMEM supplemented with 10% FBS and 1-mM sodium pyruvate (all purchased from Wisent), at 37°C in a 5% CO2 atmosphere-humidified incubator. Transfections were carried out as cells were plated out in 6-well plates (Sarstedt). Approximately ∼1.2 × 106 cells per well were plated and concomitantly transfected with 20-nM ASO and 4.5-μl Lipofectamine 3000 (Life technologies). After 24 h, cells were washed and scraped in ice-cold PBS. One fifth of the cells was used for RNA extraction (see the Quantitative PCR analyses section) and the rest for histone extraction with the EpiQuik™ Total Histone Extraction HTKit (Epigentek) according to manufacturer's protocol. Approximately 1 μg of total histones was fractionated through 12% acrylamide SDS-PAGE. Macroh2a1 polyclonal rabbit antibody (Active motif no39594) diluted 1000X was used for western blot analysis. Histone 3 monoclonal antibody (Active motif no61476) diluted 1000X was used as a loading control. Results are from three independent experiments, each performed in triplicate.
+ Open protocol
+ Expand
2

Establishment of HEK293 Cell Lines Expressing DOPr and EPAC Biosensor

Check if the same lab product or an alternative is used in the 5 most similar protocols
HEK293
cells were cultured
in 100 mm Petri dishes (Sarstedt, Germany) at 37 °C and 5% CO2 in the Dulbecco’s modified Eagle’s medium (DMEM)
supplemented with 10% fetal bovine serum, 2 mM l-glutamine,
and 100 unit mL–1 penicillin–streptomycin.
For transient transfections of DOPr- and BRET-based biosensors constructs,
HEK293 cells were seeded at 3–3.5 × 106 cells/100
mm Petri dish and were grown for 18–24 h before transfecting
with polyethylenimine (PEI) (Polysciences Inc., Warrington, PA, USA)
at a 3:1 PEI/DNA ratio as per the manufacturer’s instructions.
Monoclonal cell lines stably expressing DOPr and the EPAC biosensor
(hereafter referred to as EPAC DOPr HEK293 cells) were established
by first transfecting 6 μg of the pSig-Flag-DOPr DNA construct/100
mm Petri dish using Lipofectamine (Invitrogen), followed by a puromycin
selection (1 μg/mL). This stable cell line was subsequently
transfected with 3 μg of the EPAC biosensor, using Lipofectamine
(Invitrogen) for the transfection and hygromycin (50 μg/mL)
for selection.
+ Open protocol
+ Expand
3

BRET Assays for GPCR Signaling

Check if the same lab product or an alternative is used in the 5 most similar protocols
HEK293 cells were a kind gift of Dr. Laporte, McGill University57 (link). They were cultured in 100 mm Petri dishes (Sarstedt, Germany) at 37 °C and 5% CO2 in the Dulbecco’s modified Eagle’s medium (DMEM) supplemented with 10% fetal bovine serum, 2 mm l-glutamine and 100 unit mL−1 penicillin-streptomycin.
Transient transfections of vectors encoding BRET biosensors in combination with complementary signaling partners were performed in 100 mm Petri dishes (3 × 106 cells) for G protein and Kir3.2 channel activation assays and in 96-wells culture plates coated with polyD-lysine (PerkinElmer, MA, USA) for βarr recruitment assays (32,000 cells/well), using the polyethylenimine transfection reagent (Polysciences, PA, USA) at a PEI/DNA ratio of 3:158 (link). For cAMP production assays, stable cell lines expressing the GFP10-Epac-RlucBRET2-cAMP biosensor59 (link) were plated in six-wells plates (Greiner bio-one, Austria) and stably transfected with 1 μg of either MORs or DORs (human or rat) biosensor using PEI. They were selected respectively using hygromycin (100 µg mL−1) and puromycin (10 mg mL−1).
+ Open protocol
+ Expand
4

Quantifying Nintedanib Internalization in Cells

Check if the same lab product or an alternative is used in the 5 most similar protocols
Internalization of nintedanib was determined by exploiting the fluorescent emission of nintedanib by means of a cytofluorimetric assay [35 (link)]. Briefly, A549 cells were seeded in standard medium (2 × 106 cells/100 mm Petri dishes, Sarstedt), and after adhesion, cells were grown in the presence or in the absence of TGFβ (10 ng/mL) for 48 h. Next cells were exposed to nintedanib or conjugated compounds at different concentrations. After 24 h, cells were gently detached using Accutase (ECB3056D, Euroclone, Pero, Milano, Italy) or trypsin and the fluorescence, associated with different cell populations, was evaluated using the BV480 channel of the FACSCanto BD instrument (using 405 nm laser). Untreated cells were used as the negative control. The same procedure was applied to evaluate the internalization in K562, SSM2c, and L929 cells.
+ Open protocol
+ Expand
5

Culturing HGSOC Cell Lines

Check if the same lab product or an alternative is used in the 5 most similar protocols
HGSOC cell lines were cultured in 100 mm petri dishes (Sarstedt Inc., Nümbrecht, Germany) in OSE medium (WISENT Inc., St-Bruno, QC, Canada) supplemented with 10% fetal bovine serum (WISENT Inc.), 0.5 µg/mL amphotericin B (WISENT Inc.) and 50 µg/mL gentamycin sulfate (WISENT Inc.) (complete OSE medium). Plates were maintained at 37 °C in low oxygen conditions (7% O2 and 5% CO2). Cells were passaged at near confluence by trypsin 0.05% (WISENT Inc.) digestion. Cultures were discarded before the 20th passage, after which a fresh batch of cells was thawed for further experiments. For resistant cell lines, passages were counted from when stable resistance was confirmed.
+ Open protocol
+ Expand

About PubCompare

Our mission is to provide scientists with the largest repository of trustworthy protocols and intelligent analytical tools, thereby offering them extensive information to design robust protocols aimed at minimizing the risk of failures.

We believe that the most crucial aspect is to grant scientists access to a wide range of reliable sources and new useful tools that surpass human capabilities.

However, we trust in allowing scientists to determine how to construct their own protocols based on this information, as they are the experts in their field.

Ready to get started?

Sign up for free.
Registration takes 20 seconds.
Available from any computer
No download required

Sign up now

Revolutionizing how scientists
search and build protocols!