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4 protocols using tnf mab11

1

Quantification of SIV-specific CD8+ T Cells

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SIV-specific CD8+ T cells were quantified in mononuclear cells isolated from blood and LN by flow cytometric intracellular cytokine analysis, as previously described in detail45 (link). Briefly, mixes of sequential (11 amino acid overlapping) 15-mer peptides (AnaSpec) spanning the SIVmac239 Gag, Env, Pol, Nef, Rev/Tat, Vif/Vpr/Vpx proteins were used as antigens in conjunction with anti-CD28 (BD Biosciences) and anti-CD49d co-stimulatory mAb (BD Biosciences). Cells were incubated at 37 °C with peptide mixes/pools and co-stimulatory antibodies for 1 hr, followed by an additional 8 hr. incubation in the presence of Brefeldin A (5 μg/ml, Sigma-Aldrich). Co-stimulation in the absence of peptides served as background control. Cells were stained with fluorochrome-conjugated monoclonal antibodies [CD3 (SP34-2), CD4 (L200), CD8a (SK1), IFN-γ (B27)(BD Biosciences), TNF (MAB11, eBioscience), CD69 (FN50, BD Biosciences)], and data were collected on an LSRII (BD Biosciences) and analyzed using the FlowJo software program (version 8.8.7; Tree Star, Inc.). Response frequencies to each peptide mix were defined by the intracellular expression of TNF and/or IFN-γ by CD3+, CD4, CD8+ T cells after subtraction of background. Response frequencies to each peptide mix were added to obtain total SIV-specific response frequencies.
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2

Quantification of SIV-specific CD8+ T Cells

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SIV-specific CD8+ T cells were quantified in mononuclear cells isolated from blood and LN by flow cytometric intracellular cytokine analysis, as previously described in detail45 (link). Briefly, mixes of sequential (11 amino acid overlapping) 15-mer peptides (AnaSpec) spanning the SIVmac239 Gag, Env, Pol, Nef, Rev/Tat, Vif/Vpr/Vpx proteins were used as antigens in conjunction with anti-CD28 (BD Biosciences) and anti-CD49d co-stimulatory mAb (BD Biosciences). Cells were incubated at 37 °C with peptide mixes/pools and co-stimulatory antibodies for 1 hr, followed by an additional 8 hr. incubation in the presence of Brefeldin A (5 μg/ml, Sigma-Aldrich). Co-stimulation in the absence of peptides served as background control. Cells were stained with fluorochrome-conjugated monoclonal antibodies [CD3 (SP34-2), CD4 (L200), CD8a (SK1), IFN-γ (B27)(BD Biosciences), TNF (MAB11, eBioscience), CD69 (FN50, BD Biosciences)], and data were collected on an LSRII (BD Biosciences) and analyzed using the FlowJo software program (version 8.8.7; Tree Star, Inc.). Response frequencies to each peptide mix were defined by the intracellular expression of TNF and/or IFN-γ by CD3+, CD4, CD8+ T cells after subtraction of background. Response frequencies to each peptide mix were added to obtain total SIV-specific response frequencies.
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3

T Cell Cytokine Production Assay

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CD19 CAR transduced T cells (1×106 cells) were incubated at an effector target ratio of 1:1 with either CD19+ K562, NGFR+ K562 or autologous B cells (CLL cells or EBV-transformed B cells), in AIM-V medium supplemented with 5% heat-inactivated human AB serum in presence of 10 μg/mL brefeldin A (Sigma-Aldrich), GolgiStop (BD Biosciences) and the anti-CD107a (BD Biosciences) antibody for 6 hours at 37°C and 5% CO2. After incubation, monoclonal antibodies directed against CD3 (SK7), CD4 (RPA-T4), and CD8 (SK1) (all from BD Biosciences) were used for cell surface staining, and after fixation and permeabilization with the BD Cytofix/Cytoperm kit (BD Biosciences), antibodies against IL-2 (MQ1–17H12) (Biolegend), TNF (Mab11) (eBioscience), IFN-γ (4S.B3), and IL-17 (N49–653) (BD Biosciences), or in other experiments granzyme B (GB11) (BD Biosciences) were used for intracellular staining. For maximal stimulation controls, PMA and ionomycin (Sigma-Aldrich) were used at 25 ng/mL and 1 μg/mL, respectively, in presence of brefeldin A at 10 μg/mL and GolgiStop for 6 hours at 37°C and 5% CO2. Cells were analyzed by flow cytometry as described above.
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4

Comprehensive T Cell Characterization

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The following antibodies were used for flow cytometry analysis: CD3 (SK7; BD), CD4 (SK3; eBioscience), CD8 (RPA-T8; BD), CD69 (FN50; BioLegend), TNF (MAb11; eBioscience), IFN-γ (4S.B3; eBioscience), and MHC I (W6/32; Bio X Cell). The following functional grade antibodies were used to stimulate T cells in culture: CD28 (L293; BD), CD49d (L25; BD), and CD3 (SK7; eBioscience). The pan–anti–MHC II–blocking antibody Tu39 and isotype control IgG2a κ were from BioLegend. The anti–HLA-DR–blocking antibody G46-6 was from BD. The 15mer-overlapping peptide pool covering Ad169 IE-1 and custom-made 15mer-overlapping peptide pools covering the Towne and Toledo IE-1 sequences were from JPT Peptide Technologies. Individual peptides used for truncation studies and for pulsing HLA transfectants were synthesized by JPT or Genemed Synthesis Inc. HLA-B08 tetramers folded with the EM9 and QV9 peptides were from the National Institutes of Health tetramer core facility. Recombinant human IL-2, IL-4, and GM-CSF were from Immunex.
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