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Actb vic mgb

Manufactured by Thermo Fisher Scientific

The ACTB VIC-MGB is a probe-based real-time PCR assay designed to detect the expression of the human beta-actin (ACTB) gene. It utilizes the VIC fluorescent dye and a minor groove binder (MGB) quencher for detection. The ACTB VIC-MGB assay is a core component for gene expression analysis and can be used to normalize target gene expression data.

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2 protocols using actb vic mgb

1

Quantitative Analysis of SAMD9L Expression

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RNA was isolated using Qiagen RNEasy Mini Kit, with RNA input normalized across samples before cDNA reaction. Samples were pretreated with dsDNase and reverse transcribed using Maxima First Strand cDNA synthesis (Thermo Fisher Scientific). All qPCRs were analyzed using a Bio-Rad CFX96 96-well optical cycler. To assess SAMD9L expression, primers targeted either human SAMD9L mRNA (forward: 5′-CTG​GGA​TTC​TGA​GCA​TCC​TTT​C-3′, reverse: 5′-CAC​ATG​CTC​TTT​GGT​CCA​GT-3′) or SAMD9L plasmid (forward: 5′-GCT​GGG​CAG​AGT​CTC​CTA​AA-3′, reverse: 5′-CAC​AAG​GAG​AAG​CAC​AGG​AA-3′), and expression was compared with HPRT mRNA (forward: 5′-GTT​GGA​TAT​AAG​CCA​GAC​TTT​GTT​G-3′, reverse: 5′-AGG​GAA​CTG​ATA​GTC​TAT​AGG​CT-3′). qPCR was performed using Power SYBR Green (Thermo Fisher Scientific) and 400 nM primers and cycled according to manufacturer instructions. To assess mCherry and GFP mRNA expression, Taqman gene expression assays (Thermo Fisher Scientific) with Taqman Fast Advanced Master Mix (Thermo Fisher Scientific) were used according to manufacturer instructions. GFP FAM-MGB (assay ID: Mr04097229_mr; Thermo Fisher Scientific) or mCherry FAM-MGB (assay ID: Mr07319438_mr; Thermo Fisher Scientific) were multiplexed with ACTB VIC-MGB (assay ID: Hs01060665_g1; Thermo Fisher Scientific) as a loading control.
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2

Quantifying mRNA Expression in Mouse Bone Marrow

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To collect total bone marrow RNA, tibias from mice were either crushed (MPLW515L mice) with a mortar and pestle in 1 mL of TRIzol (Invitrogen) or flushed (Jak2V617F mice) with 1 mL of TRIzol. RNA was extracted following the manufacturer’s instructions. cDNA was prepared using iScript reverse transcription supermix (Bio-Rad). Quantitative real-time PCR (qRT-PCR) was performed using the TaqMan Universal RT Master Mix (Applied Biosystems). Data were collected on a StepOnePlus Real-Time PCR System (Applied Biosystems). TaqMan probe primers were all from Thermo Fisher Scientific: Actb VIC-MGB (Mm04394036_g1), Tgfb1 FAM-MGB (Mm01178820_m1), Tgfbr2 FAM-MGB (Mm03024091_m1), Col1a1 FAM-MGB (Mm00801666_g1), Col3a1 FAM-MGB (Mm01254476_m1), Acta2 FAM-MGB (Mm01546133_m1), and Loxl1 FAM-MGB (Mm01145738).
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