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14 protocols using hp 5973 mass spectrometer

1

GC-MS Analysis of Essential Oils

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The phytochemical profile of essential oil samples was determined through GC/MS analysis. An Agilent USB=393752 GC (Agilent Technologies, Palo Alto, CA, USA) connected to an Agilent HP 5973 Mass Spectrometer (mass selective detector) in electron impact (EI, 70 eV) mode was used to obtain GC/MS data. The GC was equipped with a HHP-5MS 5% phenylmethylsiloxane column (capillary column, 30 m × 0.25 mm × 0.25 μm film thickness, Restek, PaloAlto, CA, USA) having an FID detector. Helium gas was used as carrier gas (flow rate 1 mL/min) while a dynamic oven temperature range was used. The initial temperature was retained at 70 °C for 1 min followed by a 6 °C/min increase up to 180 °C. The temperature was again retained for 5 min at 180 °C and then increased at a rate of 5 °C up to 280 °C and retained for 20 min. The samples were injected in a splitless mood (1/1000 in pentane, v/v). The scan range was 50 m/z to 800 m/z. The individual compounds were identified through comparative analysis with their retention times and spectral pattern on the same conditions from our database, NIST libraries as well as Kovat retention indexes (relative calculation with n-alkane series on same columns).
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2

Photocatalytic Reduction of Nitrobenzene

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In general, all chemicals were used as received without further purification. The reduction of nitrobenzene was conducted under an Ar atmosphere (1 atm) in a 10 mL (25 mL for gram scale) round-bottomed pyrex glass flask with a sealed spigot and a magnetic stirrer. A purple LED lamp (~400 nm) was used as the light source. In the reaction, the concentration of nitrobenzene was 0.02 mol/L, unless specified otherwise, dissolved in an aqueous solution of PA at a volume ratio of 3:1. The concentration of nitrobenzene was increased 50–fold for the large-scale experiment. The product compositions were analyzed and determined by means of an Agilent HP5973 mass spectrometer and Agilent 1260 high efficiency liquid chromatography. The Agilent Series are equipped with a vacuum degasser, a quaternary pump, an autosampler and a DAD system, connected to a Agilent ChemStation software. A C18 column (250 × 4.6 mm i.d., 5 μm) were used. Flow rate was 1 mL min-1. Detection wavelength was at 280 nm. Solvents that constituted the mobile phase were (A) methanol and (B) water with the volume ratio 50:50.
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3

Essential Oil Extraction from Artemisia iva

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To isolate A. iva essential oils (AIVO), 100 g of ground leaves were submitted to hydrodistillation for 3 h using a Clevenger-type apparatus. The hydrolat was extracted twice with n-pentane (20 mL), dried over anhydrous sodium sulfate, then concentrated up to 1.5 mL at 35 °C using a Vigreux column and subsequently analyzed [23 (link)]. Analysis of AIVO was performed by gas chromatography-mass spectrometry (GC-MS) using a gas chromatograph HP 6890 interfaced with an HP 5973 mass spectrometer (Agilent Technologies, Palo Alto, CA, USA) with electron impact ionization (70 eV). Separation of the individual compound was achieved by an HP-5MS capillary column (60 m length, 0.25 mm i.d., 0.25 µm film thickness) under the following operating conditions: temperature program: 50 °C (1 min) to 280 °C (8 min) at 5° C/min. Injection temperature: 250 °C; flow rate of the carrier gas helium: 1.2 mL/min; ion source and quadrupole temperatures: 230 and 150 °C, respectively; ionization voltage: 70 eV; mass range: 50–550 u.
The volatile compounds were identified by comparing their retention indices relative to (C7-C20) n-alkanes with the literature and/or with authentic compounds when available. Further identification was made by matching their mass spectra fragmentation patterns with corresponding data (Wiley 275L and NIST05a libraries) and other published mass spectra [24 ].
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4

Gas Chromatography Analysis of TEO

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TEO was obtained from Inabata Koryo Co., Ltd. (Osaka, Japan). The supplier analyzed the chemical composition of the oil using an HP5890A gas chromatograph (Agilent Technologies, Tokyo, Japan) equipped with a split/splitless injector (split ratio 100:1) and a flame ionization detector, and connected to an HP5973 mass spectrometer (Agilent Technologies, Tokyo, Japan). A DB-WAX column with a diameter of 0.25 mm and a length of 30 m was used. The temperature was programmed to increase from 50 °C to 240 °C at 3 °C/min. The composition of the volatile compounds is presented in Table 1.
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5

Oxidative conversion of HMF to products

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Reactions
were conducted in sealed reaction tubes maintained at 45 °C.
0.2 mmol of HMF, 0.1 mmol of base, 2.0 mL of methanol, and 20 mg of
catalyst were placed in a 20 mL glass tube. Prior to the reaction,
O2 gas was purged for 3 min to the reaction mixture. The
tubes were then sealed thoroughly. 1 mL aliquots were collected at
given time periods. These samples were filtered through a millipore
filter (pore size 0.45 μm) to remove the catalyst particulates
to analyze products. Reactant conversion and product selectivity were
calculated from gas chromatography (GC-HP6890 Agilent Technologies)
measurements using a HP-5 column. Product compositions were analyzed
using an Agilent HP5973 mass spectrometer.
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6

Gas Chromatography-Mass Spectrometry Analysis

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Gas chromatography was carried on an HP6890 gas chromatograph coupled with an HP5973 mass spectrometer (Agilent Technologies, Santa Clara, CA, USA) with a Bruker Br-5MS capillary column (30 m × 0.25 mm id × 0.25 μm) (Bruker, Fremont, CA, USA) under helium with a flow of 1 mL/min.
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7

GC-MS Analysis of Essential Oil Composition

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To an essential oil sample of approximately 0.05 g, n-hexane was added to a volume of 5 mL, and GC-MS was used for qualitative analysis of the essential oil composition. The qualitative analysis of the sample was performed using the method described by Deba et al. and Hosni et al., with minor modifications [34 (link),17 (link)]. GC-MS analyses were performed on an HP 6890 (II) gas chromatograph interfaced with an HP 5973 mass spectrometer (Agilent Technologies, Palo Alto, CA, USA) with electron impact ionization (70 eV). A DB-5 capillary column (30 m × 0.25 mm, 0.3 μm film thickness, Agilent Technologies, Folsom, CA, USA) was used. The oven temperature was held at 50 °C for 2 min and then increased at 5 °C/min to 250 °C. The carrier gas, helium, was injected at a flow rate of 1.0 mL/min. The scan time and mass range were 1 s and 41–400 m/z, respectively. The data were recorded as the average of three analyses. Matching of Kovat’s indices [35 (link)] and matching of mass spectra were performed for composition identification. The mass spectra used for reference were obtained from the National Institute of Standards and Technology and Wiley databases.
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8

Analytical Characterization of Organic Compounds

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All chemicals were purchased from Merck or Fluka chemical companies. The 1H NMR (500 MHZ) and 13C NMR (125 MHZ) were run on a Varian—Inova 500. Melting points were recorded on a Stuart Scientific Apparatus SMP3 (UK) in open capillary tubes. Elemental analyses for C, H, and N were performed using a Thermo Finnigan FLASH EA. Reaction progress was screened by TLC using silicagel polygram SIL G/UV254 plates. Mass spectra were recorded on an Agilent Technology (HP) 5973 mass spectrometer operating at an ionization potential of 70 eV.
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9

3HB Quantification by GC and GC-MS

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Upon cell harvest, cells were lyophilized, and 5–10 mg of each sample was subjected to acidic methanolysis as described by Brandl et al. (1988). Synthesized 3HB‐methyl esters were then quantified by gas chromatography (Timm et al., 1990), using an Agilent 6850 gas chromatograph (GC), which was equipped with a BP21 polyethylene glycol capillary column (50 m by 0.22 mm; 250 nm film thickness) and a flame ionization detector (Agilent Technologies, Waldbronn, D). To determine the content of 13C, obtained 3HB‐methylesters were analysed by GC‐MS according to Tan et al. (2016). Applying an Agilent 6890 GC, which was connected to an Agilent HP 5973 mass spectrometer (MS), the samples were separated on a BPX35 polyethylene glycol capillary column (60 m by 0.22 mm; 250 nm film thickness; SGE Deutschland GmbH, Darmstadt, D). For this, the temperature programme described by Andreeßen et al. (2010) was applied.
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10

GC-MS Analysis of Monoterpene-rich Essential Oil

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The MSEO was diluted 1:1000 in hexane and vortexed before injection. In total, 1 μL of the prepared sample was injected in splitless mode in a HP6890 Gas-Chromatograph coupled with a HP5973 Mass Spectrometer (Agilent Technologies, Santa Clara, CA, USA). The injected sample was run into a Bruker Br-5MS capillary column (30 m × 0.25 mm id × 0.25 μm, Bruker, Billerica, MA, USA) with helium flow of 1 mL/minute. The oven temperature ranged from 50 °C to 300 °C with 6 °C/minute rate and a final hold for 5 min; the solvent delay was 3 min. The mass spectrometer had the source set at 230 °C, the MS Quad at 150 °C, and ionization energy at 70 eV. The compounds’ mass values were scanned between 50 and 550 amu. The identification of the MSEO components was based on retention indices (RIs), calculated by means of a C8–C20 alkane standard mixture calibration curve and subsequently compared with Adams indices [26 ], computer matching with the NIST0.2 mass spectra library (USA National Institute of Science and Technology software, NIST, Gaithersburg, MD, USA), and by co-injection with reference samples (limonene and carvone).
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