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F1002

Manufactured by Panagene

The F1002 is a laboratory centrifuge designed for general-purpose use. It is capable of processing samples at high speeds to separate different components. The centrifuge features a compact and durable construction, allowing for reliable performance in various laboratory settings.

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4 protocols using f1002

1

Telomere Dysfunction Imaging in Bone

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TIF assay (n = 4/group) was performed on deplasticized-MMA embedded bone sections by incubation in 0.01M citrate buffer (pH 6.0) at 95°C for 15 min then on ice for 15 min before washing in water and PBS for 5 min each. The TIF assay was performed as described.(3 (link)) In-depth Z-stacking was used (a minimum of 135 optical slices with ×63 objective). The number of TIFs per cell was assessed by manual quantification of partially or fully overlapping (in the same optical slice, Z) signals from the telomere probe (Cy-3-labelled telomere-specific (CCCTAA) peptide nucleic acid probe (F1002, Panagene) 54, Techno 10-ro, Yuesong-gu, Daejeon 34027, South Korea) and γ-H2AX, phosphorylation of the C-terminal end of histone H2A.X, a marker for double strand breaks in DNA (Cell Signaling Technology, Danvers, MA, USA). In z-by-z analysis. Images were deconvolved using a deconvolution algorithm, with blinded deconvolution in AutoQuant X3 (Media Cybernetics, Rockville, MD, USA). We defined a minimum of two TIFs to assign it as a TIF+ cell. TIF+ osteoblasts (~50 to 100 per bone section/animal), TIF+ osteocytes (~35 to 50 per bone section/animal), and TIF+ bone marrow cells (~1000 per bone section/animal) were quantified using FIJI (an Image J distribution software; NIH, Bethesda, MD, USA; https://imagej.nih.gov/ij/).(21 (link))
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2

Telomere Length Quantification by PNA-FISH

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Sections for immunofluorescence were treated as described above. After incubation with secondary antibody, sections were rinsed in PBS three times for 5 min, fixed with 2% paraformaldehyde for 2 min, rinsed again, dipped through an ethanol series (70%, 95%, 100%), and air‐dried. Samples were denatured at 80 °C for 3 min and hybridized with the telomere PNA probe (0.5 µg mL−1, F1002, Panagene) in the dark for 2 h. Sections were washed in washing buffer (50% formamide, A100314‐0500; 10 × 10−3m Tris–HCL PH7.2, T2069‐100ML, SIGMA) twice for 15 min, rinsed in PBS three times for 5 min and dried. Hoechst in Vectashield was used for nucleus staining.
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3

Visualization of SUMO and PML Dynamics

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IF and FISH were performed following a previously published protocol(Zhao et al., 2021 (link)). Cells were fixed in 4% formaldehyde for 10 min at room temperature, followed by permeabilization in 0.5% Triton X-100 for 10 min. Cells were incubated with primary antibody at 4°C in a humidified chamber overnight and then with secondary antibody for 1 h at room temperature before washing and mounting. Primary antibodies were anti-SUMO1 (Ab32058, Abcam,1:200 dilution), anti-SUMO2/3 (Asm23, Cytoskeleton, 1:200 dilution), and anti-PML (sc966, Santa Cruz, 1:50 dilution). For IF-FISH, coverslips were first stained with primary and secondary antibodies, then fixed again in 4% formaldehyde for 10 min at room temperature. Coverslips were then dehydrated in an ethanol series (70%, 80%, 90%, 2 min each) and incubated with a 488-tel G or Cy3-tel C PNA probe (F1008, F1002, Panagene) at 75°C for 5 min and then overnight in a humidified chamber at room temperature. Coverslips were then washed and mounted for imaging.
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4

Telomere Length Analysis in Fibroblasts

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Fibroblasts at PD10 were treated with the colcemid kit (Chromocenter, Tottori, Japan) and fixed in Carnoy’s solution following the manufacturer’s protocol. The fixed cells on coverslips were treated with ribonuclease (312-01931, Nippon Gene, Tokyo, Japan) and 0.005 % pepsin (V1959, Promega, WI, U.S.), hybridized with peptide nucleic acid oligonucleotide probes (F1002, Panagene, Daejeon, South Korea), and immuno-stained with Hoechst 33342 (H342, Dojindo, Kumamoto, Japan), according to the manufacturer’s protocols. Images were recorded using a BZ-X700 microscope (Keyence, Osaka, Japan). Quantification was performed using the Telometer (https://demarzolab.pathology.jhmi.edu/telometer/), as previously described [46 (link), 47 (link)].
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