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Alexa 488 anti rabbit secondary antibody

Manufactured by Thermo Fisher Scientific
Sourced in United States, Norway, United Kingdom

The Alexa 488 anti-rabbit secondary antibody is a fluorophore-conjugated antibody that specifically binds to rabbit primary antibodies. It is designed for use in immunofluorescence and other fluorescence-based applications.

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15 protocols using alexa 488 anti rabbit secondary antibody

1

Kidney Tissue Preparation and Immunofluorescence

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Tissue from freshly dissected kidneys was fixed in 4% formaldehyde overnight at 4°C, followed by washes in PBS. Tissue was then placed in a 30% sucrose/PBS solution at 4°C until the sucrose solution fully penetrated the tissue. The kidney tissue was then mounted in OCT for cryosectioning. 8μm sections were placed on slides for immunofluorescent staining. Antibody staining and immunofluorescent detection was performed as described [56 (link)]. Rabbit polyclonal anti-human Six2 antibody was obtained from Proteintech (11562-1-AP) and was detected using Alexa488 anti-rabbit secondary antibody (Invitrogen). In addition, sections were also stained with Alexa555 wheat germ agglutinin (Invitrogen) and DAPI (Roche). Images were captured using a Nikon C2 confocal microscope and processed in Adobe Photoshop.
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2

Immunohistochemical Analysis of DRG Neurons

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Mouse tissues were fixed by transcardial perfusion with 4% paraformaldehyde in cold PBS. The sacral DRG (S1–S4) were excised and prepared for frozen sectioning. DRG were sectioned at 15µm. Sections were placed in blocking solution for 1 hour at room temperature. Then sections were incubated with either rabbit anti-p-ERK1/2 (1:50; Cell Signaling), rabbit anti-PAR2 (1:50; Santa Cruz; sc-13504), or anti-goat isotype (1:50; Santa Cruz; sc-2028) at 4°C overnight. The sections were washed 3 times in PBS for 5 min and placed in Alexa 488 anti-rabbit secondary antibody (1:400; Invitrogen; A11034) for 1–2hrs at room temperature in the dark. Sections were washed 3 times 5 min each in PBS. Slides were covered with mounting medium containing DAPI (Invitrogen; 1319493) and sealed with a coverslip (Corning). Immunohistochemical tissues were sectioned and processed at the Northwestern pathology core. Briefly, tissue were fixed in 10% formalin and embedded in paraffin and stained for either toluidine blue or hematoxylin & eosin (H&E). Images were viewed with a Leica DMI 6000B inverted microscope and z stacks were deconvolved using AutoQuant Deconvolution algorithms by Media Cybernetics.
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3

Immunofluorescence Staining of CENP-F

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After RNA FISH, cells were fixed for 20 min in 4% PFA (in PBS) and then permeabilized with 0.5% Triton X-100 for 3 min at room temperature. After blocking with 5% BSA (in PBS), cells were immunostained for 1 h with a primary antibody, and after subsequent washes, the cells were incubated for 1 h with a secondary antibody. Coverslips were stained with Hoechst and mounted in p-Phenylenediamine mounting medium (Cat. No. P6001; Sigma-Aldrich). Antibodies used were rabbit anti–CENP-F (Abcam) and Alexa-488 anti-rabbit secondary antibody (Invitrogen).
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4

Coronal Brain Slice Immunofluorescence

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PFA fixed, 30-μm-thick coronal brain slices were obtained and processed for immunofluorescence analysis. Immunofluorescence was performed, after blockade with 5% goat serum, by overnight incubation at 4°C with a GluA1 CTD primary antibody (rabbit, Synaptic Systems, #182–003) followed by incubation with an Alexa 488 anti-rabbit secondary antibody (Invitrogen). Images were obtained using a Leica DMRB fluorescence microscope and processed with ImageJ.
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5

Visualize Orco-Expressing Neurons in Fly Antennae

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To show the OSNs that express Orco in the third antennal segment, the following fly lines were used: orco-LexA (kindly provided by Benton, R., University of Lausanne, Switzerland) and lexAop-mCD8: GFP (w*; P{y+t7.7 w+mC = 13XLexAop2-mCD8::GFP}attP40/CyO, Bloomington Stock Center, Bloomington, IN, USA). Rabbit anti-GFP primary antibody (1:5000; Invitrogen, Waltham, MA, USA) and Alexa 488 anti-rabbit secondary antibody (1:1000; Invitrogen, Waltham, MA, USA) were used to performed an immunofluorescence on antennal cryosections in the lexAop-mCD8: GFP;orco-LexA genotype as previously described [28 (link)].
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6

Immunofluorescent Staining of Clusterin and HMGB1

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DU145 tumor cells, grown in covered wells of a microscope slide, were treated with 55 nM DTX for 24 h at 37 °C. Then, the cells were fixed and dually stained with anti-clusterin and anti-HMGB1. Briefly, slides were blocked with goat serum, followed by incubation with mouse anti-human clusterin (Upstate, 1:500) and rabbit anti-human HMGB1 (Cell Signaling, 1:200) overnight at 4 °C. Next day, slides were incubated with an Alexa 549 anti-mouse secondary antibody (Invitrogen, 1:1000) or Alexa 488 anti-rabbit secondary antibody (Invitrogen, 1:1000) for 30 min. The slides were mounted with Everbrite mounting medium with DAPI (Biotium). Slides were analyzed with an automated Zeiss Imager Z.1 upright microscope through a 63×/1.4 NA objective with DAPI, FITC, and Alexa 549 filters. Images were captured by using the AxioCam MRm CCD camera and Axiovision (Version 4.7; Carl Zeiss).
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7

Immunofluorescence Analysis of Phosphorylated MLC2

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Cells were fixed with 4% formaldehyde, permeabilised with 0.2% Triton X-100 for 5 min, blocked with 5% BSA-PBS for 1 hr at room temperature, and incubated with anti-p-MLC2 (p-MLC2S19, 1:200 in 5% BSA-PBS) overnight at 4°C. Alexa-488 anti-rabbit secondary antibody (Life Technologies) was used at 1:500 for 1 hr at room temperature. F-actin was detected with Phalloidin (1 hr RT) and nuclei were stained with Hoechst 33258 (Life Technologies). Imaging was carried out on a Zeiss LSM 510 Meta confocal microscope (Carl Zeiss) with C-Apochromat × 40/1.2 NA (water) or a Plan Apochromat × 63/1.4 NA (oil) objective lenses and Zen software (Carl Zeiss). Line scan analysis was performed in ImageJ.
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8

Immunostaining of Peri-Implant Soft Tissue

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Mice peri-implant soft tissue specimens were fixed with 4% formaldehyde, permeabilized with 0.2% Triton X-100 for 5 min, blocked with 5% BSA-PBS for 1 hr at room temperature, and incubated overnight with anti-p-MLC2 (p-MLC2S19, 1 : 200 in 5% BSA-PBS) at 4°C. Alexa-488 anti-rabbit secondary antibody (Life Technologies) at a ratio of 1 : 500 was used for 1 hr at room temperature. Cell nuclei were stained with DAPI (Life Technologies). Imaging was performed on a Zeiss LSM 510 Meta confocal microscope (Carl Zeiss) and analyzed using Zen software (Carl Zeiss).
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9

Preimplantation Development Analysis

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Preimplantation development, from the mouse 2PN zygote to the blastocyst stage, was evaluated on day 5 after hCG injection [28 (link)]. Developed blastocysts were fixed in 4% paraformaldehyde with 1% polyvinyl alcohol for immunocytochemistry (ICC). The embryos were blocked in 3% BSA (Biosesang, Seongnam, Korea) and incubated with a monoclonal mouse antibody against Oct-4 (Abcam, UK), which is expressed in the inner cell mass (ICM), overnight at 4°C. In ICC of the negative control group, the embryos were incubated without a specific primary antibody against Oct-4. On the next day, blastocysts were conjugated with Alexa 488 anti-rabbit secondary antibody (Life Technology, Norway), and the nuclei were counter stained with 4′,6-diamidino-2-phenylindole (Vector Laboratories, USA). Images were obtained using a fluorescence microscope (AX-70, Olympus, Tokyo, Japan) with IMT i-Solution program (I-solution, British Columbia, Canada). Total blastomere cell number and ICM number were counted with captured fluorescence image, and then, trophectoderm (TE) number was calculated by subtracting the number of ICM from the total cell number [29 (link)].
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10

Quantifying Aortic GPx1 Expression

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Immunofluorescence staining of aortic root sections was performed using rabbit anti-mouse GPx1 antibody to observe the intensity of GPx1 in the aortic roots. Briefly, air-dried cryostat sections (6 μm thickness) of aortic root were fixed with the pre-cooled acetone for 10 min and rinsed with 1× phosphate buffered saline (PBS) three times. Non-specific staining was blocked by incubation with 5% goat serum in 1× PBS for 30 min followed by incubation of anti-GPx1 antibody overnight at 4°C in a 1:200 dilution. After rinsing with 1× PBS, sections were incubated with Alexa 488 anti-rabbit secondary antibody (Invitrogen Molecular Probes, UK) for 1 h while nuclei were stained with DAPI in the mounting agent (Invitrogen Molecular Probes). Microscopic examination was performed on an Olympus IX-83 inverted fluorescence microscope (Olympus, Tokyo, Japan). Images were acquired by a monochrome CCD camera using CellSens software (Olympus, Tokyo, Japan).
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