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4 protocols using plan apochromat 20 0.8 air objective

1

Whole-mount Immunohistochemistry of Zebrafish

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For whole-mount immunohistochemistry, zebrafish embryos were deyolked and mounted onto glass slides with 70% glycerol. For synapse quantifications, images were acquired using a Zeiss LSM880 with Airyscan, Axio examiner confocal microscope with Plan-Apochromat 20×/0.8 air objective.
To image abnormal motor axons in response to various combinations of drug treatment, a Zeiss AxioImager Z1, with ApoTome.2 upright microscope was used.
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2

Visualizing CXCR4+ Cells in Ischemic Hearts

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For immunofluorescence analysis, hearts were harvested 3 days after arterial ligation and were immediately embedded in OCT and frozen at − 80 °C. Frozen samples were cut with a cryotome (Leica CM1510, Nussloch, Germany) into 10 μm sections, fixed with 4% formaldehyde, and blocked with goat serum. The sections were incubated with monoclonal PE-conjugated anti mouse CXCR4 (clone2B11, eBioscience) or respective PE-labeled isotype control (Rat IgG2b kappa, eBioscience) for 1 hour at room temperature. DNA was stained with 1 µg/mL DAPI (Sigma), and a coverslip was placed using mounting medium (DAKO). Primary antibodies were applied 1:100 (final dilution). Images were acquired using a LSM 880 confocal microscope with Airyscan module and Plan-Apochromat 20×/0.8 air objective (Carl Zeiss Microscopy) and processed using ZEN software (Zeiss).
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3

Imaging of Organoids Using Confocal Microscopy

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Images were acquired with a Zeiss Axioplan2 using a Plan-Apochromat 20×/0.8 air objective or Zeiss LSM 710 laser scanning confocal microscope using Plan-Apochromat 20×/0.75 air and Plan-Apochromat 63×/1.40 oil objectives. Tiled and stitched images of sagittal sections were collected using a Plan-Apochromat 20×/0.75 air objective, controlled by Zen software (Zeiss).
Organoids were imaged using Cell Insight CX7-LZR (Thermo Scientific), and images were processed with HCS Studio Cell Analysis software (Thermo Scientific). Maximal projection z-stacks are presented, and co-localization was interpreted only in single z-stacks. z-stacks were projected using ImageJ. Images were assembled in Adobe Illustrator CC2015.3.
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4

Multimodal Imaging of Tissue Sections

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Images of tissue sections stained by immunofluorescence, Click-EdU labeling, and TUNEL staining were acquired by using the Zen 2 software (Zeiss) on an AxioImager M2 microscope (Zeiss) equipped with a high-resolution camera (pco.edge; sCMOs Cameras) and with either a Plan Apochromat 20×/0.8 air objective (420651-9911; Zeiss) or with a 40× Plan Apochromat 40×/0.95 air objective (420661-9970; Zeiss). Single-channel images were merged to create composite multichannel images with ImageJ software.
Images of Oil Red O– and toluidine-stained tissue sections were acquired by using AxioVision 4.8 software (Zeiss) on a Zeiss Axioskop 2 microscope equipped with an AxioCam HRc camera (Zeiss) and with either a Plan-Neofluar 20×/0.5 air objective (440341-9904; Zeiss), a Plan-Neofluar 40×/1.30 oil immersion objective (1022-818; Zeiss), or a Plan-Neofluar 100×/1.30 oil immersion objective (440480; Zeiss).
Images of nodal stainings were acquired on an LSM 780-FCS laser scanning confocal microscope (Zeiss) equipped with a Plan-Apochromat DIC 63×/1.4 oil immersion objective (421782-9900-799; Zeiss) using an argon laser (488 nm), a solid-state laser (561 nm), and a helium-neon laser (633 nm). For signal detection two Quasar photomultipliers and 32 photomultiplier GaAsP detectors were used.
All images were acquired at room temperature (20–24°C).
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