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Microplate manager 4

Manufactured by Bio-Rad
Sourced in United States

Microplate Manager 4.0 is a software application developed by Bio-Rad for managing microplate-based experiments. The core function of the software is to provide a user-friendly interface for controlling and monitoring various parameters of microplate-based assays, such as plate layout, data acquisition, and data analysis.

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8 protocols using microplate manager 4

1

Determination of Antibacterial Activity

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The minimum inhibitory and bactericidal concentrations (MICs and MBCs) were determined using 96-well microtiter plates. The bacterial suspension was adjusted with sterile saline to a concentration of 1.0 × 10−5 cfu/mL. Compounds to be investigated were dissolved in broth LB medium (100 μL) with bacterial inocula (1.0 × 10−4 cfu per well) to achieve the wanted concentrations (1 mg/mL). The microplates were incubated for 24 h at 48 °C. The lowest concentrations without visible growth (under the binocular microscope) were defined as concentrations that completely inhibited bacterial growth (MICs). The compounds investigated were dissolved in 5% DMSO (1 mg/mL) and added in the LB medium to the inoculum. The MBCs were determined by serial sub-cultivation of 2 μL into microtiter plates containing 100 μL of broth per well and then submitted to further incubation for 72 h. The lowest concentration with no visible growth was defined as the MBC, indicating 99.5% killing of the original inoculum. The optical density of each well was measured at 655 nm by a Bio-Rad Laboratories Microplate Manager 4.0 and compared with a blank and the positive control. Streptomycin and ampicillin were used as positive controls (1 mg/mL) [58 (link),59 ]. All experiments were performed in duplicate and repeated three times.
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2

Quantification of Plasma sCD14 by ELISA

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Plasma sCD14 levels were determined using the Human sCD14 Quantikine® ELISA (R&D Systems). Plasma samples were diluted 200-fold with sample diluent solution prior to analysis. Optical density was determined using a Microplate Reader 3550 (BioRad) and plasma sCD14 concentrations were calculated using the Microplate Manager 4.0 (BioRad).
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3

Antibacterial Activity Screening Protocol

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The compounds were tested on antibacterial activity using a microdilution method [55 ,56 (link)]. Minimal inhibitory (MIC) and minimal bactericidal (MBC) concentrations of the tested samples were determined by serial dilutions of compounds dissolved in 5% DMSO-water solution in 96-well microtitre plates. Bacterial inoculum, 1.0 × 104 CFU mL−1, was added to LB medium and compounds dissolved in 5% DMSO solution containing 0.1% Tween 80 (v/v) (1 mg mL−1). Minimal inhibitory concentration (MIC) was defined as the lowest concentration that inhibited bacterial growth, without visible growth, at the binocular microscope. The lowest concentration with no visible growth was defined as the MBC, indicating 99.5% killing of the original inoculum. All wells were measured at a wavelength of 655 nm by Microplate manager 4.0 (Bio-Rad Laboratories, Hercules, California, USA) and compared with a blank and the positive control. Antibiotics used as a positive control were Streptomycin (Sigma P 7794) and Ampicillin (Panfarma, Belgrade, Serbia) (1 mg mL−1 in sterile physiological saline), while 5% DMSO was used as a negative control. All experiments were performed in duplicate and repeated three times.
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4

Measuring Intracellular cAMP Levels

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cAMP intracellular concentrations were assayed in HCM cells after epi stimulation. HCMa cells (1 × 105) were seeded in 12-well plates and stimulated with epi at different concentrations (0, 0.5, 5, 50 and 500 μM) for 15 min. Cells were lysed with 300 μl of 0.1 M HCl. Lysates were immediately used for a competitive immunoassay (Direct cyclic AMP Enzyme-linked Immunosorbent Assay kit, Enzo Life Sciences, Farmingdale, NY, USA), to measure the intracellular concentration of cAMP. Data were analyzed by using Microplate Manager 4.0 software (Bio-Rad, Hercules, CA, USA).
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5

Cytokine Profiling of Human Cell Lines

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Supernatant fluids from both U937 and COLO320DM human intestinal epithelial cell lines were collected and stored at −70°C. The cell pellets were reconstituted in PBS and placed into a −70°C freezer. The freeze and thaw method was carried out to lyse the cells and then harvested the cell lysate. Protein concentration for the various cytokines (IL-10, IL-1β, and TNF-α) was determined by Enzyme-Linked Immunosorbent Assay (ELISA) with the supernatant and lysate from the COLO320DM Cells and U-937 Cells. The ELISA plates were analyzed in the Microplate Reader (BIO-RAD®, USA) and Microplate Manager 4.0 software (BIO-RAD®, USA). The data was further analyzed in Microsoft Excel and SPSS. Finally, an ANOVA test followed by post-HOC Scheffe test (p<0.05) was carried out to look for statistical significance.
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6

Quantification of Lipid Peroxidation via TBARS Assay

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Lipid peroxidation was determined by the quantification of malondialdehyde (MDA), a specific end-product of the oxidative degradation process of lipids. The thiobarbituric acid reactive substances (TBARS) assay was used to quantify MDA as described by Rosa et al. [45 ]. Homogenates were treated with 8.1% sodium dodecyl sulfate, 20% trichloroacetic acid (pH 3.5), thiobarbituric acid and a 15:1 (v/v) mixture of n-butanol and pyridine. In the TBARS assay, the thiobarbituric acid reacts with the MDA to yield a fluorescent product, which was detected spectrophotometrically at 532 nm. MDA concentrations were calculated with the Microplate Manager 4.0 software (BIO-RAD, USA), based on an eight-point calibration curve (from 0 to 0.3 μM TBARS) using MDA bis (dimethyl acetal; Merck, Switzerland). The results were expressed in relation to the protein content of the samples (nmol mg−1 protein).
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7

Quantitative Cytokine Analysis

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IL-6 and TGFβ-1 levels were analyzed after 24 h of cell exposure to ScLL and 15d-PGJ 2 . Cytokine levels were measured in culture supernatants using a sandwich Elisa kit for IL-6 (PeproTech, Rocky Hill, USA) and TGFβ-1 (Sigma-Aldrich), according to the manufacturer's instructions. Absorbance was recorded using a microplate reader (Biochrom), at 405 nm wavelength for IL-6, and 450 nm for TGFβ-1. The results obtained for absorbance were interpolated into a standard curve, using Microplate Manager 4.0 software (Bio-rad, Hercules, USA).
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8

Quantifying IL-10 Cytokine Levels

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The number of IL-10 cytokines released in the cell culture supernatants was evaluated using a sandwich ELISA kit (PeproTech, Rocky Hill, NJ, USA), according to the manufacturer's instructions. Absorbance was recorded using a microplate reader The results obtained for absorbance were interpolated into a standard curve, using the Microplate Manager 4.0 software (Bio-rad, Hercules, CA, USA).
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