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Lb medium

Manufactured by Beyotime

LB medium is a commonly used growth medium for cultivating bacteria in the laboratory. It provides the necessary nutrients and growth conditions for various bacterial strains to thrive. The medium is composed of peptone, yeast extract, and sodium chloride, which support the growth and proliferation of bacteria.

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7 protocols using lb medium

1

Purification and binding assay of RIG-I

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Escherichia coli BL21(DE3) cells were transformed with pET-32a(+)-zbRIG-I or pET-32a(+) plasmids, respectively. Then, cells were grown in 50 ml of LB medium (Beyotime) containing 0.5 mM isopropyl-1-thio-β-D-galactopyranoside (IPTG) (Sigma) at 18°C overnight with shaking at 120 rpm. Cells were pelleted by centrifugation at 4,500 rpm for 30 min and lysed in 10 ml of lysis buffer (100 mM sodium phosphate, pH 8.0, 600 mM NaCl, and 0.02% Tween-20) (Beyotime) via sonication on ice. The sonicated mixture was centrifuged at 15,000 rpm at 4°C for 20 min, and then the supernatant was affinity-purified with Dynabead His-Tag magnetic beads (Invitrogen) according to the manufacturer's instruction.
His pull-down assays were performed as described previously with some modifications (20 (link)). His-zbRIG-I-magnetic beads were incubated with the lysates of HEK 293T cells transfected with pCMV-Flag-zbTRIM25 or pCMV-Flag empty vectors on a roller, respectively. After incubation at 4°C overnight, the magnetic beads were washed three times with lysis buffer to remove unbound His-zbRIG-I and then analyzed via Western blotting using anti-Flag or anti-His antibodies. His tag protein alone was served as a negative control.
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2

Site-Directed Mutagenesis and Plasmid Construction

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The SRF open reading frame (ORF) clone was purchased from OriGene Technologies (Catalog No: SC118177). Primers for site-directed mutagenesis (Mut-G274D forward/reverse and Mut-G294C: forward/reverse) were designed online (https://www.genomics.agilent.com/primerDesignProgram.jsp) (Table 2), and PCR ampli cation products were digested using DpnI (NEB, Catalog: R0176S) before being transfected into DH5α and cultured on ampicillin dishes at 37°C for 14h. Selected successful mutant colonies were grown in 120ml LB medium (Beyotime, ST158), and then plasmids were extracted from the bacteria solution.
To construct the SRFluc reporter plasmid, the genomic sequence of SRF was obtained from the NCBI (https://www.ncbi.nlm.nih.gov/). A fragment beginning approximately 1.2kb upstream of the transcription initiation site of SRF was ampli ed (sense-primer: 5
) from the DNA a healthy individual and was cloned into the pGL3-basic vector (Promega, USA) between the KpnI and HindIII sites. The atrial natriuretic factor (ANF) promoter plasmid was a kind gift from Professor Mona Nemer [28] . The full-length cDNAs for GATA4 expression constructs in the pcDNA3.1(+) vector were previously generated in our laboratory [29] . All plasmid DNA was con rmed and Sanger sequenced by the Beijing Genomics Institute (BGI) in China.
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3

Mutagenesis and Cloning of SRF Transcription Factor

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The SRF open reading frame (ORF) clone was purchased from OriGene Technologies (Catalog No: SC118177). Primers for site-directed mutagenesis (Mut-G274D forward/reverse and Mut-G294C: forward/reverse) were designed online (https://www.genomics.agilent.com/primerDesignProgram.jsp) (Table 2), and PCR amplification products were digested using DpnI (NEB, Catalog: R0176S) before being transfected into DH5α and cultured on ampicillin dishes at 37°C for 14h. Selected successful mutant colonies were grown in 120ml LB medium (Beyotime, ST158), and then plasmids were extracted from the bacteria solution.
To construct the SRFluc reporter plasmid, the genomic sequence of SRF was obtained from the NCBI (https://www.ncbi.nlm.nih.gov/). A fragment beginning approximately 1.2kb upstream of the transcription initiation site of SRF was amplified (sense-primer:
) from the DNA of a healthy individual and was cloned into the pGL3-basic vector (Promega, USA) between the KpnI and HindIII sites. The atrial natriuretic factor (ANF) promoter plasmid was a kind gift from Professor Mona Nemer [28] . The full-length cDNAs for GATA4 expression constructs in the pcDNA3.1(+) vector were previously generated in our laboratory [29] . All plasmid DNA was confirmed and Sanger sequenced by the Beijing Genomics Institute (BGI) in China.
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4

Generating Mutant SRF Reporter Plasmids

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The SRF open reading frame (ORF) clone was purchased from OriGene Technologies (Catalog No: SC118177). Primers for site-directed mutagenesis (Mut-G274D forward/reverse and Mut-G294C: forward/reverse) were designed online (https://www.genomics.agilent.com/primerDesignProgram.jsp) (Table 2), and PCR ampli cation products were digested using DpnI (NEB, Catalog: R0176S) before being transfected into DH5α and cultured on ampicillin dishes at 37°C for 14h. Selected successful mutant colonies were grown in 120ml LB medium (Beyotime, ST158), and then plasmids were extracted from the bacteria solution.
To construct the SRFluc reporter plasmid, the genomic sequence of SRF was obtained from the NCBI (https://www.ncbi.nlm.nih.gov/). A fragment beginning approximately 1.2kb upstream of the transcription initiation site of SRF was ampli ed (sense-primer: 5
) from the DNA of a healthy individual and was cloned into the pGL3-basic vector (Promega, USA) between the KpnI and HindIII sites. The atrial natriuretic factor (ANF) promoter plasmid was a kind gift from Professor Mona Nemer [28] . The full-length cDNAs for GATA4 expression constructs in the pcDNA3.1(+) vector were previously generated in our laboratory [29] . All plasmid DNA was con rmed and Sanger sequenced by the Beijing Genomics Institute (BGI) in China.
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5

Mutagenesis and Cloning of SRF Transcription Factor

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The SRF open reading frame (ORF) clone was purchased from OriGene Technologies (Catalog No: SC118177). Primers for site-directed mutagenesis (Mut-G274D forward/reverse and Mut-G294C: forward/reverse) were designed online (https://www.genomics.agilent.com/primerDesignProgram.jsp) (Table 2), and PCR amplification products were digested using DpnI (NEB, Catalog: R0176S) before being transfected into DH5α and cultured on ampicillin dishes at 37°C for 14h. Selected successful mutant colonies were grown in 120ml LB medium (Beyotime, ST158), and then plasmids were extracted from the bacteria solution.
To construct the SRFluc reporter plasmid, the genomic sequence of SRF was obtained from the NCBI (https://www.ncbi.nlm.nih.gov/). A fragment beginning approximately 1.2kb upstream of the transcription initiation site of SRF was amplified (sense-primer:
) from the DNA of a healthy individual and was cloned into the pGL3-basic vector (Promega, USA) between the KpnI and HindIII sites. The atrial natriuretic factor (ANF) promoter plasmid was a kind gift from Professor Mona Nemer [28] . The full-length cDNAs for GATA4 expression constructs in the pcDNA3.1(+) vector were previously generated in our laboratory [29] . All plasmid DNA was confirmed and Sanger sequenced by the Beijing Genomics Institute (BGI) in China.
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6

Generating Mutant SRF Reporter Plasmids

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The SRF open reading frame (ORF) clone was purchased from OriGene Technologies (Catalog No: SC118177). Primers for site-directed mutagenesis (Mut-G274D forward/reverse and Mut-G294C: forward/reverse) were designed online (https://www.genomics.agilent.com/primerDesignProgram.jsp) (Table 2), and PCR ampli cation products were digested using DpnI (NEB, Catalog: R0176S) before being transfected into DH5α and cultured on ampicillin dishes at 37°C for 14h. Selected successful mutant colonies were grown in 120ml LB medium (Beyotime, ST158), and then plasmids were extracted from the bacteria solution.
To construct the SRFluc reporter plasmid, the genomic sequence of SRF was obtained from the NCBI (https://www.ncbi.nlm.nih.gov/). A fragment beginning approximately 1.2kb upstream of the transcription initiation site of SRF was ampli ed (sense-primer: 5
) from the DNA of a healthy individual and was cloned into the pGL3-basic vector (Promega, USA) between the KpnI and HindIII sites. The atrial natriuretic factor (ANF) promoter plasmid was a kind gift from Professor Mona Nemer [28] . The full-length cDNAs for GATA4 expression constructs in the pcDNA3.1(+) vector were previously generated in our laboratory [29] . All plasmid DNA was con rmed and Sanger sequenced by the Beijing Genomics Institute (BGI) in China.
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7

Mutagenesis and Cloning of SRF Transcription Factor

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The SRF open reading frame (ORF) clone was purchased from OriGene Technologies (Catalog No: SC118177). Primers for site-directed mutagenesis (Mut-G274D forward/reverse and Mut-G294C: forward/reverse) were designed online (https://www.genomics.agilent.com/primerDesignProgram.jsp) (Table 2), and PCR amplification products were digested using DpnI (NEB, Catalog: R0176S) before being transfected into DH5α and cultured on ampicillin dishes at 37°C for 14h. Selected successful mutant colonies were grown in 120ml LB medium (Beyotime, ST158), and then plasmids were extracted from the bacteria solution.
To construct the SRFluc reporter plasmid, the genomic sequence of SRF was obtained from the NCBI (https://www.ncbi.nlm.nih.gov/). A fragment beginning approximately 1.2kb upstream of the transcription initiation site of SRF was amplified (sense-primer:
) from the DNA of a healthy individual and was cloned into the pGL3-basic vector (Promega, USA) between the KpnI and HindIII sites. The atrial natriuretic factor (ANF) promoter plasmid was a kind gift from Professor Mona Nemer [28] . The full-length cDNAs for GATA4 expression constructs in the pcDNA3.1(+) vector were previously generated in our laboratory [29] . All plasmid DNA was confirmed and Sanger sequenced by the Beijing Genomics Institute (BGI) in China.
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