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3 protocols using dabrafenib

1

Synthesis and Characterization of Polymeric Nanoparticles

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Sulfuric acid (H2SO4), Hydrogen peroxide (H2O2) solution (30%wt in H2O), 3-(Trimethoxysilyl) propyl methacrylate (TMSPMA), Methanol, Acetic acid, Chloroform (CHCl3), 2,2-Dimethoxy-2phenylacetophenone (DMPA), Ethylene glycol dimethacrylate (EGDMA), Poly(ethylene glycol) methacrylate (Mn = 500 gmol -1 , PEGMA), Methacrylic acid (MAA), 2-Aminoquinoline (2-AQ), Fetal bovine serum (FBS) were purchased from Sigma-Aldrich, UK. Dimethyl sulfoxide (DMSO) was purchased from Honeywell, UK. Dabrafenib was purchased from Adooq bioscience, USA. All the chemicals were of analytical grade and used without further purification. Deionised water (DI-water) was obtained from water purification system (PURELAB Option S/R, ELGA). Phosphate buffered saline (PBS) was freshly prepared by dissolving PBS tablets (Oxoid, UK) in DI-water, which comprised Sodium chloride (8.0 mg mL -1 ), Potassium chloride (0.2 mg mL -1 ), Disodium hydrogen phosphate (1.15 mg mL -1 ), Potassium dihydrogen phosphate (0.2 mg mL -1 ), pH 7.3 ±0.2, at 25°C.
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2

Cytotoxicity Assessment of Anticancer Drugs

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dabrafenib-insensitive, DMSO control and initial HT-29 cells were seeded into 96-well plates at 10 × 103 cells/well density. After 24 h of seeding, a medium was replaced with drugs according to dose range. The drugs were used as following: dabrafenib (AdooQ Bioscience, USA), oxaliplatin (LC Laboratories, USA.), capecitabine (LC Laboratories, USA). After 72 h of drug treatment, MTT cell viability assay was performed. We used GraphPad Prism software to calculate IC50 values in all cell viability results through following the software’s guidelines63 (link). The drug concentrations used in the experiment were initially transformed as a logarithmic concentration. Then, we analysed the data using log(inhibitor) vs. normalised response model and non-linear regression. The dose response model estimated the IC50 value according to the rest of data points used in the regression model.
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3

Cell-based Assay of Multi-Targeted Kinase Inhibitors

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Regorafenib, M-2, M-5, and elacridar were purchased from Toronto Research Chemicals (North York, ON). Ko143 was from Sigma-Aldrich (St. Louis, MO). Imatinib mesylate was from Focus Biomolecules (Plymouth Meeting, PA). Afatinib, bortezomib, cabozantinib, carfilzomib, dabrafenib, dacomitinib, dasatinib, lapatinib, lenvatinib, pazopanib, ponatinib, ruxolitinib, tofacitinib, trametinib, vandetanib, and vemurafenib were from AdooQ Bioscience (Irvine, CA). Sorafenib was from LKT Laboratories Inc. (St. Paul, MN). Sunitinib was from Synkinase Pty Ltd. (San Diego, CA). Crizotinib was from LC Laboratories Inc. (Woburn, MA). Gefitinib and erlotinib were from Cayman Chemical Company (Ann Arbor, MI). Nilotinib was from ChemScene, LLC (Monmouth Junction, NJ). All other chemicals and reagents were of analytical grade and were obtained from commercial sources.
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